Variant report

Variant	rs552289037
Chromosome Location	chr6:35464239-35464240
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:35463384..35465009-chr6:35703029..35705389,2	K562	blood:
2	chr6:35265003..35267090-chr6:35463346..35464932,2	K562	blood:
3	chr6:35310116..35312027-chr6:35462385..35465150,2	MCF-7	breast:
4	chr6:35463571..35465690-chr6:35654249..35656915,2	K562	blood:
5	chr19:11198114..11200950-chr6:35464173..35466447,2	K562	blood:
6	chr6:35310114..35311915-chr6:35462651..35465491,3	MCF-7	breast:
7	chr6:35227208..35228940-chr6:35464081..35465836,2	K562	blood:
8	chr6:35462682..35465009-chr6:35702407..35705389,2	K562	blood:
9	chr6:35435808..35436604-chr6:35464010..35464598,3	Hela-S3	cervix:
10	chr6:35418643..35423313-chr6:35462563..35468017,10	K562	blood:
11	chr6:35263661..35265616-chr6:35463054..35466039,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000130164	Chromatin interaction
ENSG00000112033	Chromatin interaction
ENSG00000096060	Chromatin interaction
ENSG00000112039	Chromatin interaction
ENSG00000232909	Chromatin interaction
ENSG00000198755	Chromatin interaction
ENSG00000023892	Chromatin interaction
ENSG00000065029	Chromatin interaction
ENSG00000157343	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528351	chr6:35377922-35465786	Flanking Active TSS Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	69 gene(s)	inside rSNPs	diseases
2	nsv519370	chr6:35378778-35537406	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases
3	nsv984463	chr6:35432948-35477634	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	67 gene(s)	inside rSNPs	diseases
4	nsv602911	chr6:35457396-35465483	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	22 gene(s)	inside rSNPs	diseases
5	esv1843819	chr6:35457396-35465749	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases
6	esv1851060	chr6:35457396-35465749	Active TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases
7	esv1794339	chr6:35457396-35465786	Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases
8	esv1800978	chr6:35457396-35465786	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases
9	esv1803037	chr6:35457396-35465786	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases
10	esv1837448	chr6:35457396-35465786	Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases
11	nsv462909	chr6:35457396-35502202	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	24 gene(s)	inside rSNPs	diseases
12	nsv602912	chr6:35457396-35502202	Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	24 gene(s)	inside rSNPs	diseases
13	nsv602913	chr6:35457842-35465422	Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	22 gene(s)	inside rSNPs	diseases
14	esv3384067	chr6:35462874-35466272	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases
15	nsv602914	chr6:35463202-35465109	Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases
16	esv3507609	chr6:35463474-35466122	Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases
17	esv3507610	chr6:35463474-35466122	Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases
18	esv3440600	chr6:35463499-35466347	Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases
19	esv2758048	chr6:35463741-35806504	Genic enhancers Weak transcription Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
20	esv2759420	chr6:35463741-35806504	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
21	esv3323555	chr6:35464074-35465922	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases
22	esv13071	chr6:35464170-35465801	Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases
23	esv1792492	chr6:35464197-35465786	Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases
24	esv1820663	chr6:35464197-35471362	Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35456200-35464400	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr6:35461000-35465000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:35461000-35465000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr6:35462400-35464400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr6:35463200-35466000	Active TSS	HUES64 Cell Line	embryonic stem cell
6	chr6:35463200-35466200	Active TSS	Fetal Kidney	kidney
7	chr6:35463400-35465600	Active TSS	Sigmoid Colon	Sigmoid Colon
8	chr6:35463400-35465800	Active TSS	Small Intestine	intestine
9	chr6:35463400-35466000	Active TSS	Breast Myoepithelial Primary Cells	Breast
10	chr6:35463600-35464400	Enhancers	Primary B cells from cord blood	blood
11	chr6:35463600-35464600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr6:35463600-35465400	Active TSS	Pancreas	Pancrea
13	chr6:35463600-35465400	Bivalent/Poised TSS	HepG2	liver
14	chr6:35463600-35465600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:35463600-35465600	Active TSS	Fetal Intestine Large	intestine
16	chr6:35463600-35465600	Active TSS	Placenta	Placenta
17	chr6:35463600-35465600	Active TSS	Rectal Mucosa Donor 29	rectum
18	chr6:35463600-35465600	Active TSS	Right Ventricle	heart
19	chr6:35463600-35465600	Bivalent/Poised TSS	Thymus	Thymus
20	chr6:35463600-35465800	Active TSS	Gastric	stomach
21	chr6:35463600-35466000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr6:35463600-35466000	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr6:35463600-35466000	Active TSS	Colon Smooth Muscle	Colon
24	chr6:35463600-35466000	Active TSS	Esophagus	oesophagus
25	chr6:35463600-35466000	Active TSS	Ovary	ovary
26	chr6:35463600-35466000	Active TSS	A549	lung
27	chr6:35463600-35466000	Active TSS	NHLF	lung
28	chr6:35463600-35466200	Active TSS	ES-I3 Cell Line	embryonic stem cell
29	chr6:35463600-35466200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr6:35463600-35466200	Active TSS	iPS-15b Cell Line	embryonic stem cell
31	chr6:35463600-35466200	Active TSS	Aorta	Aorta
32	chr6:35463600-35466200	Active TSS	Placenta Amnion	Placenta Amnion
33	chr6:35463600-35466200	Active TSS	Rectal Smooth Muscle	rectum
34	chr6:35463600-35466200	Active TSS	HSMMtube	muscle
35	chr6:35463600-35466800	Active TSS	H9 Cell Line	embryonic stem cell
36	chr6:35463800-35464600	Weak transcription	Primary hematopoietic stem cells	blood
37	chr6:35463800-35465200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr6:35463800-35465400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr6:35463800-35465400	Active TSS	Liver	Liver
40	chr6:35463800-35465400	Active TSS	Brain Angular Gyrus	brain
41	chr6:35463800-35465400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
42	chr6:35463800-35465400	Active TSS	Duodenum Mucosa	Duodenum
43	chr6:35463800-35465400	Bivalent/Poised TSS	Fetal Thymus	thymus
44	chr6:35463800-35465400	Active TSS	Lung	lung
45	chr6:35463800-35465400	Active TSS	NH-A	brain
46	chr6:35463800-35465400	Active TSS	NHEK	skin
47	chr6:35463800-35465600	Active TSS	Brain Anterior Caudate	brain
48	chr6:35463800-35465600	Active TSS	Brain Hippocampus Middle	brain
49	chr6:35463800-35465600	Active TSS	Left Ventricle	heart
50	chr6:35463800-35465600	Active TSS	Stomach Smooth Muscle	stomach

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