Variant report

Variant	rs552338073
Chromosome Location	chr3:98900143-98900144
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:98898412..98900467-chr3:98901353..98902956,2	MCF-7	breast:

Extended variants
information (count: 164 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:164 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007140	chr3:98421229-99202458	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv536663	chr3:98421229-99202458	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1007486	chr3:98597738-99249081	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv999649	chr3:98815244-98947271	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv536664	chr3:98815244-98947271	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1009629	chr3:98846458-98903887	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv1012264	chr3:98855069-98949409	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1012110	chr3:98855939-98900805	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv1000298	chr3:98855939-98949409	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1004438	chr3:98863348-98949409	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv997372	chr3:98864056-98953749	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv1008663	chr3:98867385-98953749	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	esv3518631	chr3:98868311-98921967	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
15	esv3518632	chr3:98868311-98921967	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
16	nsv998521	chr3:98877662-98949409	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv1014277	chr3:98877662-98953749	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv1004810	chr3:98888976-98953749	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
19	nsv3915	chr3:98892668-98940053	Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
20	nsv1010759	chr3:98893510-98949409	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
21	nsv1010512	chr3:98893510-98953749	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
22	nsv1012359	chr3:98893510-98965013	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
23	esv1798220	chr3:98894142-99020463	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
24	nsv591090	chr3:98894246-98902113	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
25	esv1805073	chr3:98894246-98930445	Enhancers ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
26	esv1829946	chr3:98894246-98930445	Enhancers Active TSS ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
27	nsv980066	chr3:98894567-98901227	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
28	nsv433343	chr3:98895386-98901139	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
29	esv1843941	chr3:98895386-98902344	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
30	nsv591091	chr3:98895386-98902344	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
31	esv1821218	chr3:98895637-98902205	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
32	nsv591092	chr3:98895637-98902344	Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
33	nsv591093	chr3:98895650-98901389	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
34	esv1807582	chr3:98895650-98902205	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
35	esv1811198	chr3:98895650-98902205	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
36	esv1812458	chr3:98895650-98902344	Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
37	esv1842165	chr3:98895650-98902344	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
38	nsv591094	chr3:98895650-98902344	Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
39	nsv508229	chr3:98896531-98918586	Weak transcription ZNF genes & repeats Enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
40	esv2550503	chr3:98896884-98904347	Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
41	esv3461137	chr3:98897062-98904360	Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
42	nsv1003886	chr3:98897698-98949302	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
43	nsv1010851	chr3:98897698-98953749	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
44	esv3510072	chr3:98897912-98903560	Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
45	esv3461140	chr3:98898087-98903635	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
46	esv3510071	chr3:98898362-98903435	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
47	esv3461135	chr3:98898586-98902680	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
48	esv2639651	chr3:98898659-98903267	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
49	esv3510073	chr3:98898845-98902547	Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
50	esv3461136	chr3:98898862-98902960	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:98899200-98900200	Enhancers	HMEC	breast

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