Variant report

Variant	rs552349706
Chromosome Location	chr4:99291618-99291619
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529623	chr4:98501338-99460166	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv1004616	chr4:99085875-99308901	Genic enhancers Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	esv2763801	chr4:99094892-99413853	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	esv2754250	chr4:99094922-99527122	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv879651	chr4:99105055-99441349	Weak transcription Genic enhancers Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv879652	chr4:99125659-99303633	Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv1004181	chr4:99208152-99529576	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv999097	chr4:99271563-99304326	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv1012360	chr4:99271563-99308481	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
10	nsv1010207	chr4:99291295-99312807	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99215000-99317000	Weak transcription	Left Ventricle	heart
2	chr4:99262800-99295600	Weak transcription	Brain Hippocampus Middle	brain
3	chr4:99262800-99333400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr4:99263000-99296000	Weak transcription	Brain Angular Gyrus	brain
5	chr4:99264200-99338200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr4:99265200-99297800	Weak transcription	Osteobl	bone
7	chr4:99265400-99298400	Weak transcription	NHDF-Ad	bronchial
8	chr4:99271600-99314800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr4:99277200-99295400	Weak transcription	Brain Anterior Caudate	brain
10	chr4:99280000-99298600	Weak transcription	NHLF	lung
11	chr4:99285000-99337800	Weak transcription	HUVEC	blood vessel
12	chr4:99285200-99294000	Weak transcription	HMEC	breast
13	chr4:99285200-99306400	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr4:99286400-99310200	Weak transcription	Small Intestine	intestine
15	chr4:99288400-99342400	Weak transcription	A549	lung
16	chr4:99288600-99293200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr4:99288600-99295800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr4:99288600-99295800	Weak transcription	HSMMtube	muscle
19	chr4:99288600-99298600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr4:99288600-99313000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr4:99288800-99293000	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr4:99288800-99294600	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr4:99288800-99295800	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr4:99288800-99319800	Weak transcription	Fetal Muscle Trunk	muscle
25	chr4:99288800-99329200	Weak transcription	Esophagus	oesophagus
26	chr4:99288800-99332000	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr4:99288800-99333600	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr4:99289000-99291800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr4:99289000-99291800	Weak transcription	Fetal Stomach	stomach
30	chr4:99289000-99292400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr4:99289000-99292600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr4:99289000-99294400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr4:99289000-99295600	Weak transcription	NHEK	skin
34	chr4:99289000-99298000	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr4:99289000-99298400	Strong transcription	Dnd41	blood
36	chr4:99289000-99301000	Weak transcription	Liver	Liver
37	chr4:99289000-99313600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr4:99289000-99314600	Weak transcription	Lung	lung
39	chr4:99289000-99318400	Weak transcription	Ovary	ovary
40	chr4:99289000-99333000	Weak transcription	Fetal Intestine Large	intestine
41	chr4:99289000-99333400	Weak transcription	Pancreas	Pancrea
42	chr4:99289000-99333600	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr4:99289400-99293400	Weak transcription	Aorta	Aorta
44	chr4:99289400-99316800	Weak transcription	Stomach Smooth Muscle	stomach
45	chr4:99289400-99321000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr4:99289800-99295800	Weak transcription	Fetal Muscle Leg	muscle
47	chr4:99290400-99295000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr4:99290400-99308200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr4:99290400-99308600	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chr4:99290400-99308600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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