Variant report

Variant	rs552387209
Chromosome Location	chr5:147462146-147462147
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033838	chr5:147360521-147484014	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv933225	chr5:147395849-147486560	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv883015	chr5:147404281-147751035	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv830515	chr5:147460852-147602247	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2569672	chr5:147460908-147462821	Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3380626	chr5:147461509-147463557	ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv8009	chr5:147461924-147462646	Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv1953564	chr5:147461992-147462665	Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3470011	chr5:147462027-147462561	Weak transcription	n/a	n/a	inside rSNPs	diseases
10	esv3526024	chr5:147462048-147462596	Weak transcription	n/a	n/a	inside rSNPs	diseases
11	esv3526026	chr5:147462068-147462593	Weak transcription	n/a	n/a	inside rSNPs	diseases
12	esv3470010	chr5:147462075-147462563	Weak transcription	n/a	n/a	inside rSNPs	diseases
13	esv3526025	chr5:147462081-147462508	Weak transcription	n/a	n/a	inside rSNPs	diseases
14	esv3470009	chr5:147462083-147462543	Weak transcription	n/a	n/a	inside rSNPs	diseases
15	esv3555	chr5:147462086-147462531	Weak transcription	n/a	n/a	inside rSNPs	diseases
16	esv3470006	chr5:147462100-147462499	Weak transcription	n/a	n/a	inside rSNPs	diseases
17	esv3424985	chr5:147462100-147462524	Weak transcription	n/a	n/a	inside rSNPs	diseases
18	esv3526027	chr5:147462110-147462534	Weak transcription	n/a	n/a	inside rSNPs	diseases
19	esv3362493	chr5:147462120-147462494	Weak transcription	n/a	n/a	inside rSNPs	diseases
20	esv3470007	chr5:147462140-147462479	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147437800-147463800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:147450400-147469000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr5:147450600-147468600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr5:147450800-147474000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr5:147451000-147470000	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr5:147454000-147470000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr5:147455600-147469000	Weak transcription	Esophagus	oesophagus
8	chr5:147457600-147462600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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