Variant report
| Variant | rs552411181 |
|---|---|
| Chromosome Location | chr18:25828272-25828273 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr18:25828025..25830927-chr20:45947091..45949515,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000101040 | Chromatin interaction |
| ENSG00000267882 | Chromatin interaction |
Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv9622 | chr18:25749905-26032816 | Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | esv2480689 | chr18:25827295-25828818 | Enhancers | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 3 | esv9090 | chr18:25827645-25828425 | Inactive region | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 4 | esv2180428 | chr18:25827686-25828406 | Inactive region | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 5 | esv3316602 | chr18:25827761-25828316 | Inactive region | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 6 | esv3491214 | chr18:25827772-25828318 | Inactive region | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 7 | esv3491212 | chr18:25827780-25828320 | Inactive region | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 8 | esv3316600 | chr18:25827814-25828282 | Inactive region | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 9 | esv3316599 | chr18:25827832-25828279 | Inactive region | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
