Variant report

Variant	rs552431629
Chromosome Location	chr19:19548696-19548697
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:19543861..19547049-chr19:19547562..19550804,4	MCF-7	breast:
2	chr19:19523469..19525649-chr19:19548128..19551006,2	K562	blood:
3	chr19:19534345..19537277-chr19:19547250..19548904,2	K562	blood:
4	chr19:19546997..19549411-chr19:19573400..19576327,2	K562	blood:
5	chr19:19497354..19499230-chr19:19547808..19549334,2	K562	blood:

Variant related genes	Relation type
ENSG00000167491	Chromatin interaction
ENSG00000207821	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv911305	chr19:19303802-19663850	Genic enhancers Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv978784	chr19:19547867-19549578	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:19518600-19549800	Weak transcription	Fetal Brain Female	brain
2	chr19:19522200-19563400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr19:19537000-19549000	Weak transcription	Brain Germinal Matrix	brain
4	chr19:19537200-19549200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr19:19537800-19549800	Weak transcription	A549	lung
6	chr19:19538200-19554800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr19:19538400-19555000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr19:19538400-19555200	Weak transcription	Primary hematopoietic stem cells	blood
9	chr19:19538400-19555800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr19:19538400-19556800	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr19:19538400-19556800	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr19:19539800-19555000	Weak transcription	Stomach Mucosa	stomach
13	chr19:19540200-19555400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr19:19540200-19562600	Weak transcription	Fetal Intestine Large	intestine
15	chr19:19540800-19549000	Weak transcription	Esophagus	oesophagus
16	chr19:19543400-19549000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
17	chr19:19543400-19550800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr19:19544000-19549200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr19:19544000-19551000	Strong transcription	Dnd41	blood
20	chr19:19544200-19555800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr19:19544400-19563400	Weak transcription	Fetal Kidney	kidney
22	chr19:19544600-19550400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr19:19545000-19550400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr19:19545200-19549000	Genic enhancers	Primary T helper cells PMA-I stimulated	--
25	chr19:19545200-19550400	Genic enhancers	Primary T cells fromperipheralblood	blood
26	chr19:19545200-19550400	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr19:19545400-19550200	Strong transcription	Fetal Thymus	thymus
28	chr19:19545400-19552200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr19:19545400-19556000	Strong transcription	Fetal Intestine Small	intestine
30	chr19:19545400-19562200	Weak transcription	Brain Angular Gyrus	brain
31	chr19:19545600-19549200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr19:19545600-19553800	Weak transcription	Placenta	Placenta
33	chr19:19545600-19554800	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr19:19545600-19568600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr19:19545800-19548800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr19:19545800-19548800	Weak transcription	Psoas Muscle	Psoas
37	chr19:19545800-19549200	Weak transcription	Brain Hippocampus Middle	brain
38	chr19:19545800-19549800	Weak transcription	HMEC	breast
39	chr19:19545800-19553400	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr19:19545800-19554600	Weak transcription	HUVEC	blood vessel
41	chr19:19545800-19555200	Weak transcription	Aorta	Aorta
42	chr19:19545800-19555400	Weak transcription	Osteobl	bone
43	chr19:19545800-19558200	Weak transcription	Fetal Lung	lung
44	chr19:19545800-19558400	Weak transcription	HSMMtube	muscle
45	chr19:19545800-19563400	Weak transcription	Rectal Smooth Muscle	rectum
46	chr19:19545800-19568600	Weak transcription	Brain Substantia Nigra	brain
47	chr19:19545800-19570600	Weak transcription	Brain Cingulate Gyrus	brain
48	chr19:19546000-19549400	Weak transcription	Brain Anterior Caudate	brain
49	chr19:19546000-19553600	Weak transcription	Primary neutrophils fromperipheralblood	blood
50	chr19:19546000-19555000	Weak transcription	Adipose Nuclei	Adipose

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