Variant report

Variant	rs552463
Chromosome Location	chr13:110930318-110930319
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs545054	0.83[AFR][1000 genomes]
rs599483	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038914	chr13:110860219-111190104	Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110915200-110936200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr13:110915600-110935800	Weak transcription	Gastric	stomach
3	chr13:110916600-110935800	Weak transcription	Duodenum Mucosa	Duodenum
4	chr13:110917400-110939000	Weak transcription	Fetal Intestine Large	intestine
5	chr13:110918200-110935800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr13:110919600-110938600	Weak transcription	HMEC	breast
7	chr13:110919800-110937600	Weak transcription	NHEK	skin
8	chr13:110920200-110951200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr13:110920600-110934200	Weak transcription	Pancreas	Pancrea
10	chr13:110921400-110935800	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr13:110921400-110935800	Weak transcription	Esophagus	oesophagus
12	chr13:110922200-110935800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr13:110922600-110934000	Weak transcription	HSMM	muscle
14	chr13:110922600-110934200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr13:110923400-110931200	Weak transcription	Lung	lung
16	chr13:110925400-110949000	Weak transcription	Fetal Kidney	kidney
17	chr13:110925600-110932000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr13:110925600-110936200	Weak transcription	HSMMtube	muscle
19	chr13:110925800-110932600	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr13:110925800-110934600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr13:110926200-110934200	Weak transcription	Psoas Muscle	Psoas
22	chr13:110926200-110937800	Weak transcription	HUVEC	blood vessel
23	chr13:110926600-110932000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr13:110926600-110932600	Enhancers	Colon Smooth Muscle	Colon
25	chr13:110926600-110934800	Enhancers	Rectal Smooth Muscle	rectum
26	chr13:110927000-110930800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr13:110927000-110934000	Enhancers	NHDF-Ad	bronchial
28	chr13:110927400-110932000	Weak transcription	Placenta	Placenta
29	chr13:110927400-110935600	Weak transcription	Fetal Stomach	stomach
30	chr13:110927400-110939000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr13:110928000-110932200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr13:110928600-110934200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr13:110928600-110934200	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr13:110928600-110935200	Enhancers	Adipose Nuclei	Adipose
35	chr13:110928600-110951000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr13:110928800-110932200	Weak transcription	Aorta	Aorta
37	chr13:110928800-110935800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr13:110929000-110934000	Weak transcription	Osteobl	bone
39	chr13:110929200-110931200	Weak transcription	Fetal Muscle Trunk	muscle
40	chr13:110929200-110932800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr13:110929200-110933400	Weak transcription	Right Atrium	heart
42	chr13:110929400-110933800	Weak transcription	Stomach Smooth Muscle	stomach
43	chr13:110929400-110934600	Enhancers	NHLF	lung
44	chr13:110929600-110930400	Enhancers	Right Ventricle	heart
45	chr13:110929600-110934000	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr13:110929600-110934000	Weak transcription	Fetal Heart	heart
47	chr13:110929800-110930400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr13:110929800-110930400	Enhancers	Fetal Lung	lung
49	chr13:110930000-110930400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr13:110930000-110931200	Weak transcription	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links