Variant report

Variant	rs552490360
Chromosome Location	chr6:150286735-150286736
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150285227..150287207-chr6:150324215..150327395,3	MCF-7	breast:
2	chr6:150286573..150288463-chr6:150317408..150319689,2	K562	blood:

Variant related genes	Relation type
ENSG00000218358	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv886765	chr6:150198491-150288722	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv970175	chr6:150286661-150300237	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150284200-150286800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
2	chr6:150284200-150286800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
3	chr6:150284200-150286800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:150284200-150287000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
5	chr6:150284400-150286800	Flanking Bivalent TSS/Enh	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr6:150284400-150286800	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
7	chr6:150284400-150286800	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
8	chr6:150284400-150286800	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
9	chr6:150284600-150286800	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr6:150284600-150286800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
11	chr6:150284600-150286800	Active TSS	HSMMtube	muscle
12	chr6:150284800-150286800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
13	chr6:150284800-150286800	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
14	chr6:150285000-150286800	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:150285000-150286800	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr6:150285000-150286800	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
17	chr6:150285000-150286800	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
18	chr6:150285200-150286800	Flanking Bivalent TSS/Enh	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr6:150285200-150286800	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
20	chr6:150285200-150286800	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
21	chr6:150285200-150286800	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
22	chr6:150285200-150286800	Flanking Bivalent TSS/Enh	Rectal Smooth Muscle	rectum
23	chr6:150285200-150286800	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
24	chr6:150285200-150286800	Bivalent Enhancer	Stomach Mucosa	stomach
25	chr6:150285200-150287000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr6:150285400-150286800	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
27	chr6:150285400-150286800	Flanking Bivalent TSS/Enh	Primary T helper 17 cells PMA-I stimulated	--
28	chr6:150285400-150286800	Bivalent Enhancer	Fetal Intestine Large	intestine
29	chr6:150285400-150286800	Bivalent Enhancer	Fetal Intestine Small	intestine
30	chr6:150285600-150286800	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr6:150285800-150286800	Bivalent Enhancer	Fetal Brain Male	brain
32	chr6:150285800-150286800	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
33	chr6:150285800-150287000	Bivalent/Poised TSS	Osteobl	bone
34	chr6:150286000-150286800	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr6:150286000-150286800	Enhancers	Pancreas	Pancrea
36	chr6:150286200-150286800	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
37	chr6:150286200-150286800	Bivalent Enhancer	Fetal Lung	lung
38	chr6:150286200-150286800	Active TSS	Right Atrium	heart
39	chr6:150286200-150286800	Active TSS	HSMM	muscle
40	chr6:150286200-150286800	Flanking Bivalent TSS/Enh	NHEK	skin
41	chr6:150286200-150287000	Bivalent Enhancer	Esophagus	oesophagus
42	chr6:150286200-150287000	Enhancers	Gastric	stomach
43	chr6:150286400-150286800	Flanking Bivalent TSS/Enh	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr6:150286400-150286800	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
45	chr6:150286400-150286800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
46	chr6:150286400-150286800	Bivalent Enhancer	Primary T killer memory cells from peripheral blood	blood
47	chr6:150286400-150286800	Bivalent Enhancer	Brain Angular Gyrus	brain
48	chr6:150286400-150286800	Bivalent Enhancer	Brain Cingulate Gyrus	brain
49	chr6:150286400-150286800	Bivalent Enhancer	Fetal Stomach	stomach
50	chr6:150286400-150286800	Bivalent Enhancer	Rectal Mucosa Donor 29	rectum

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