Variant report

Variant	rs552498022
Chromosome Location	chr3:79023129-79023130
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010804	chr3:78739648-79087470	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv834744	chr3:78911545-79076470	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3343269	chr3:79021812-79023810	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:79001000-79024200	Weak transcription	Colon Smooth Muscle	Colon
2	chr3:79006800-79023600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:79007000-79023400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr3:79011400-79027400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr3:79016800-79023600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr3:79016800-79024800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr3:79018000-79027600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr3:79018200-79027600	Weak transcription	Brain Angular Gyrus	brain
9	chr3:79018600-79024400	Weak transcription	Fetal Lung	lung
10	chr3:79018600-79027600	Weak transcription	Brain Hippocampus Middle	brain
11	chr3:79018600-79027600	Weak transcription	Brain Substantia Nigra	brain
12	chr3:79019000-79023600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr3:79019200-79025400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr3:79019600-79025400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr3:79019600-79027400	Weak transcription	Brain Anterior Caudate	brain
16	chr3:79020600-79027800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr3:79021600-79023200	Enhancers	NHEK	skin
18	chr3:79022000-79023800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr3:79022200-79023200	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr3:79022200-79023200	Weak transcription	A549	lung
21	chr3:79022200-79026200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr3:79022200-79027600	Weak transcription	Psoas Muscle	Psoas
23	chr3:79022400-79023400	Weak transcription	Ovary	ovary
24	chr3:79022400-79024400	Weak transcription	HepG2	liver
25	chr3:79022400-79041600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr3:79022600-79023200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr3:79022800-79023200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr3:79022800-79024000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
29	chr3:79023000-79023200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr3:79023000-79023200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr3:79023000-79023200	Flanking Active TSS	HUVEC	blood vessel
32	chr3:79023000-79023600	Active TSS	HSMM	muscle
33	chr3:79023000-79023800	Active TSS	HSMMtube	muscle
34	chr3:79023000-79023800	Active TSS	NHDF-Ad	bronchial
35	chr3:79023000-79023800	Flanking Active TSS	Osteobl	bone
36	chr3:79023000-79024000	Enhancers	NH-A	brain

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