Variant report

Variant	rs552502924
Chromosome Location	chr3:24290093-24290094
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv876626	chr3:24281488-24327131	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv527561	chr3:24285768-24313506	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	esv3461617	chr3:24289292-24290124	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3461621	chr3:24289316-24290095	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3461620	chr3:24289317-24290098	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24268200-24291000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr3:24272400-24301400	Weak transcription	Fetal Intestine Large	intestine
3	chr3:24279600-24291400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr3:24283600-24297000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr3:24284200-24300600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr3:24284400-24295200	Weak transcription	Fetal Stomach	stomach
7	chr3:24284600-24295200	Weak transcription	Rectal Smooth Muscle	rectum
8	chr3:24284600-24300400	Weak transcription	Pancreas	Pancrea
9	chr3:24285000-24296200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr3:24285200-24299600	Weak transcription	Left Ventricle	heart
11	chr3:24285400-24294800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr3:24285600-24291000	Weak transcription	Fetal Intestine Small	intestine
13	chr3:24286800-24294800	Weak transcription	Aorta	Aorta
14	chr3:24286800-24299200	Weak transcription	Adipose Nuclei	Adipose
15	chr3:24290000-24290200	Enhancers	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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