Variant report

Variant	rs552504487
Chromosome Location	chr9:95835456-95835457
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr9:95835433-95835503	K562	blood:	n/a	n/a

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:95817800..95819873-chr9:95833973..95836077,2	MCF-7	breast:
2	chr9:95832871..95836106-chr9:95837234..95840291,5	K562	blood:
3	chr9:95818455..95825266-chr9:95831322..95836031,9	K562	blood:
4	chr9:95832871..95835719-chr9:95837234..95839354,3	K562	blood:
5	chr9:95825270..95827646-chr9:95832621..95835628,3	K562	blood:
6	chr9:95833654..95836498-chr9:95895310..95897645,2	MCF-7	breast:
7	chr9:95833185..95836026-chr9:95840723..95843661,2	MCF-7	breast:
8	chr9:95827710..95829227-chr9:95833647..95835917,2	K562	blood:
9	chr9:95832455..95836206-chr9:95854622..95857563,3	K562	blood:

No data

Variant related genes	Relation type
SUSD3	TF binding region
ENSG00000131669	Chromatin interaction
ENSG00000157303	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1054767	chr9:95738134-95875977	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1035230	chr9:95770249-95934982	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv893575	chr9:95781040-95854013	Strong transcription Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	esv1824329	chr9:95811604-95921347	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
7	nsv893577	chr9:95812707-95872216	Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	nsv893578	chr9:95818641-95887320	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
9	esv32996	chr9:95834483-95837796	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95824600-95854000	Weak transcription	Gastric	stomach
2	chr9:95827600-95839800	Genic enhancers	Primary T helper cells fromperipheralblood	blood
3	chr9:95828200-95841600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr9:95828400-95840000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr9:95828600-95840000	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr9:95828600-95845000	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr9:95830600-95840200	Weak transcription	Primary hematopoietic stem cells	blood
8	chr9:95830800-95836200	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr9:95831400-95836400	Genic enhancers	Primary T cells fromperipheralblood	blood
10	chr9:95831800-95837400	Strong transcription	Primary T cells from cord blood	blood
11	chr9:95832800-95838600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr9:95833000-95842800	Weak transcription	GM12878-XiMat	blood
13	chr9:95833200-95837600	Enhancers	Colon Smooth Muscle	Colon
14	chr9:95833600-95835600	Enhancers	Fetal Muscle Leg	muscle
15	chr9:95833600-95837400	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr9:95833800-95836800	Enhancers	Ovary	ovary
17	chr9:95834000-95835600	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr9:95834200-95835600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr9:95834200-95838000	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr9:95834400-95835600	Enhancers	Colonic Mucosa	Colon
21	chr9:95834400-95836200	Enhancers	Brain Germinal Matrix	brain
22	chr9:95834400-95836200	Enhancers	Duodenum Smooth Muscle	Duodenum
23	chr9:95834400-95836400	Enhancers	Primary T helper naive cells from peripheral blood	blood
24	chr9:95834400-95836400	Enhancers	Fetal Stomach	stomach
25	chr9:95834400-95857400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr9:95834600-95835600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr9:95834600-95835600	Flanking Active TSS	Stomach Smooth Muscle	stomach
28	chr9:95834600-95835800	Enhancers	Fetal Muscle Trunk	muscle
29	chr9:95834600-95836200	Strong transcription	Primary neutrophils fromperipheralblood	blood
30	chr9:95834800-95836000	Weak transcription	Primary B cells from cord blood	blood
31	chr9:95834800-95836400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr9:95834800-95838200	Weak transcription	Fetal Thymus	thymus
33	chr9:95834800-95846600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr9:95834800-95848000	Weak transcription	Aorta	Aorta
35	chr9:95835000-95835600	Enhancers	HepG2	liver
36	chr9:95835000-95835800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr9:95835000-95838200	Weak transcription	Primary B cells from peripheral blood	blood
38	chr9:95835000-95838400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr9:95835000-95839000	Weak transcription	K562	blood
40	chr9:95835000-95842800	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr9:95835200-95836600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr9:95835200-95838400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr9:95835400-95836000	Weak transcription	Spleen	Spleen
44	chr9:95835400-95837200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr9:95835400-95837800	Weak transcription	Thymus	Thymus
46	chr9:95835400-95838600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr9:95835400-95838800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
48	chr9:95835400-95839400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr9:95835400-95839800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr9:95835400-95840200	Weak transcription	Fetal Intestine Small	intestine

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