Variant report

Variant	rs552520666
Chromosome Location	chr1:75138696-75138697
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011745	chr1:74730942-75477618	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv535003	chr1:74730942-75477618	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv830248	chr1:74962391-75144458	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv830259	chr1:75089177-75241062	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv461995	chr1:75133142-75166623	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv546578	chr1:75133142-75166623	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:75138200-75138800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr1:75138200-75138800	Active TSS	Brain Anterior Caudate	brain
3	chr1:75138200-75139800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
4	chr1:75138400-75139800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
5	chr1:75138600-75138800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr1:75138600-75138800	Active TSS	Brain Hippocampus Middle	brain
7	chr1:75138600-75138800	Active TSS	Fetal Brain Male	brain
8	chr1:75138600-75139600	Active TSS	Brain Germinal Matrix	brain
9	chr1:75138600-75139600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
10	chr1:75138600-75139600	Active TSS	Fetal Brain Female	brain
11	chr1:75138600-75139800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
12	chr1:75138600-75139800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
13	chr1:75138600-75139800	Bivalent/Poised TSS	Fetal Thymus	thymus
14	chr1:75138600-75140000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
15	chr1:75138600-75140000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr1:75138600-75140000	Active TSS	Brain Inferior Temporal Lobe	brain
17	chr1:75138600-75140000	Active TSS	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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