Variant report

Variant	rs552531853
Chromosome Location	chr11:10465208-10465209
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:10464794..10466976-chr11:10476133..10477728,2	MCF-7	breast:
2	chr11:10464906..10468864-chr11:10475520..10479355,5	K562	blood:
3	chr11:10459654..10465823-chr11:10469269..10473470,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000133805	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv896990	chr11:10458596-10514707	Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv3431765	chr11:10463326-10465324	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3475409	chr11:10464338-10470458	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3475420	chr11:10464352-10470454	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10457600-10471800	Weak transcription	NHDF-Ad	bronchial
2	chr11:10459400-10465600	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr11:10462600-10467400	Enhancers	Primary B cells from peripheral blood	blood
4	chr11:10462600-10467600	Enhancers	Fetal Thymus	thymus
5	chr11:10462800-10467600	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr11:10463000-10467000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr11:10463000-10467000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr11:10463200-10465400	Enhancers	Primary B cells from cord blood	blood
9	chr11:10463400-10466400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:10463600-10465400	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr11:10463800-10465600	Weak transcription	Primary hematopoietic stem cells	blood
12	chr11:10464000-10465600	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr11:10464000-10465600	Weak transcription	Primary T cells from cord blood	blood
14	chr11:10464000-10466200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr11:10464000-10466200	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr11:10464000-10466200	Weak transcription	Dnd41	blood
17	chr11:10464000-10466400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr11:10464000-10466600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr11:10464000-10466600	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr11:10464000-10467000	Weak transcription	Adipose Nuclei	Adipose
21	chr11:10464000-10471000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr11:10464000-10471000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr11:10464200-10466400	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr11:10464600-10465800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr11:10464600-10471600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr11:10464800-10466200	Weak transcription	Thymus	Thymus
27	chr11:10464800-10466400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr11:10465000-10465800	Weak transcription	Aorta	Aorta
29	chr11:10465000-10466400	Weak transcription	GM12878-XiMat	blood

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