Variant report

Variant	rs552535303
Chromosome Location	chr15:83776552-83776553
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:83772736..83774593-chr15:83776536..83778048,2	K562	blood:
2	chr15:83734435..83737238-chr15:83775284..83776851,2	MCF-7	breast:
3	chr15:83734097..83737104-chr15:83774428..83777906,3	MCF-7	breast:
4	chr15:83679523..83682277-chr15:83776010..83777597,2	K562	blood:
5	chr15:83731075..83738271-chr15:83771545..83781798,12	K562	blood:
6	chr15:83712253..83714885-chr15:83774266..83777073,2	K562	blood:

Variant related genes	Relation type
ENSG00000263643	Chromatin interaction
ENSG00000169609	Chromatin interaction
ENSG00000259308	Chromatin interaction
ENSG00000260608	Chromatin interaction
ENSG00000064726	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534418	chr15:83770116-83960718	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv3392859	chr15:83775373-83777921	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83775200-83776800	Active TSS	Skeletal Muscle Female	skeletal muscle
2	chr15:83775400-83776800	Active TSS	Primary T cells from cord blood	blood
3	chr15:83775400-83776800	Active TSS	Brain Cingulate Gyrus	brain
4	chr15:83775400-83776800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
5	chr15:83775400-83777000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
6	chr15:83775400-83777000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
7	chr15:83775400-83777000	Bivalent/Poised TSS	Fetal Intestine Small	intestine
8	chr15:83775600-83776600	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr15:83775600-83776600	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
10	chr15:83775600-83776800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
11	chr15:83775600-83776800	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr15:83775600-83776800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
13	chr15:83775600-83776800	Active TSS	Brain Anterior Caudate	brain
14	chr15:83775600-83776800	Active TSS	Pancreatic Islets	Pancreatic Islet
15	chr15:83775600-83776800	Bivalent/Poised TSS	NHEK	skin
16	chr15:83775600-83777000	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr15:83775600-83777000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
18	chr15:83775600-83777000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
19	chr15:83775600-83777000	Active TSS	Psoas Muscle	Psoas
20	chr15:83775600-83777000	Active TSS	Right Atrium	heart
21	chr15:83775600-83777400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
22	chr15:83775600-83778000	Flanking Active TSS	Primary hematopoietic stem cells	blood
23	chr15:83775600-83778000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr15:83775800-83776600	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr15:83775800-83776600	Flanking Bivalent TSS/Enh	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr15:83775800-83776600	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell
27	chr15:83775800-83776600	Bivalent/Poised TSS	Breast Myoepithelial Primary Cells	Breast
28	chr15:83775800-83776600	Active TSS	Primary T helper naive cells fromperipheralblood	blood
29	chr15:83775800-83776600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr15:83775800-83776600	Active TSS	Brain Inferior Temporal Lobe	brain
31	chr15:83775800-83776600	Bivalent/Poised TSS	Esophagus	oesophagus
32	chr15:83775800-83776600	Flanking Active TSS	Pancreas	Pancrea
33	chr15:83775800-83776600	Bivalent/Poised TSS	NH-A	brain
34	chr15:83775800-83776800	Bivalent/Poised TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr15:83775800-83776800	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr15:83775800-83776800	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
37	chr15:83775800-83776800	Flanking Bivalent TSS/Enh	HMEC	breast
38	chr15:83775800-83776800	Active TSS	K562	blood
39	chr15:83775800-83777000	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr15:83775800-83777000	Active TSS	Aorta	Aorta
41	chr15:83775800-83777000	Active TSS	Ovary	ovary
42	chr15:83775800-83777000	Bivalent/Poised TSS	Small Intestine	intestine
43	chr15:83775800-83777200	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr15:83775800-83777200	Enhancers	Liver	Liver
45	chr15:83775800-83777200	Active TSS	Brain Angular Gyrus	brain
46	chr15:83775800-83777200	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
47	chr15:83775800-83777200	Bivalent/Poised TSS	HepG2	liver
48	chr15:83775800-83777400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr15:83775800-83777600	Active TSS	HSMMtube	muscle
50	chr15:83775800-83777800	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum

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