The 2.0 version of rSNPBase

Variant report

Variant rs552540249
Chromosome Location chr11:121833969-121833970
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:38 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr11:121829800-121835000 Weak transcription Osteobl bone
2 chr11:121830000-121835200 Weak transcription HMEC breast
3 chr11:121830000-121835400 Weak transcription Brain Germinal Matrix brain
4 chr11:121830200-121835000 Weak transcription HSMM muscle
5 chr11:121830200-121835200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
6 chr11:121830200-121837600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
7 chr11:121830400-121834200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
8 chr11:121830400-121835000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
9 chr11:121830400-121835000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
10 chr11:121830400-121835200 Weak transcription Fetal Muscle Leg muscle
11 chr11:121830600-121835000 Weak transcription Fetal Brain Female brain
12 chr11:121830600-121835000 Weak transcription NHLF lung
13 chr11:121830600-121835200 Weak transcription Fetal Brain Male brain
14 chr11:121830600-121835600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
15 chr11:121831200-121835000 Weak transcription ES-WA7 Cell Line embryonic stem cell
16 chr11:121831800-121835000 Enhancers Muscle Satellite Cultured Cells --
17 chr11:121832000-121835000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
18 chr11:121832200-121834000 Weak transcription NHDF-Ad bronchial
19 chr11:121832400-121835000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
20 chr11:121832600-121834600 Enhancers Ovary ovary
21 chr11:121832600-121835000 Weak transcription HSMMtube muscle
22 chr11:121832600-121835200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
23 chr11:121832800-121835000 Weak transcription Fetal Stomach stomach
24 chr11:121833200-121835200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
25 chr11:121833200-121835200 Weak transcription Cortex derived primary cultured neurospheres brain
26 chr11:121833200-121837400 Weak transcription Brain Cingulate Gyrus brain
27 chr11:121833200-121837600 Weak transcription Brain Substantia Nigra brain
28 chr11:121833400-121835000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
29 chr11:121833400-121835200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
30 chr11:121833400-121835200 Weak transcription NHEK skin
31 chr11:121833400-121837400 Weak transcription Breast Myoepithelial Primary Cells Breast
32 chr11:121833400-121837400 Weak transcription Brain Anterior Caudate brain
33 chr11:121833600-121835000 Weak transcription HUVEC blood vessel
34 chr11:121833600-121835200 Weak transcription Fetal Adrenal Gland Adrenal Gland
35 chr11:121833600-121835600 Weak transcription Brain Hippocampus Middle brain
36 chr11:121833600-121837800 Weak transcription Brain Inferior Temporal Lobe brain
37 chr11:121833600-121840400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
38 chr11:121833800-121837600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015