Variant report

Variant	rs552550643
Chromosome Location	chr6:66061707-66061708
allele	-/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:66060579..66062154-chr6:66063684..66065572,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:26 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886011	chr6:65873577-66237309	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv886012	chr6:65905998-66354809	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	esv2752619	chr6:65917536-66062893	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv933487	chr6:65947165-66134134	Flanking Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv516417	chr6:65952526-66083780	Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv886016	chr6:66002389-66103595	Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv462978	chr6:66006820-66072542	Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
8	nsv462979	chr6:66006820-66072542	Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
9	nsv603433	chr6:66006820-66072542	Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
10	nsv886018	chr6:66009103-66091351	Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
11	nsv886019	chr6:66009103-66103595	Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
12	esv3447152	chr6:66027938-66253181	Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
13	nsv886020	chr6:66030650-66091351	Enhancers	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
14	nsv886021	chr6:66030650-66192399	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
15	nsv462980	chr6:66039601-66083780	Enhancers	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
16	nsv603434	chr6:66039601-66083780	Enhancers	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
17	nsv886022	chr6:66039601-66091351	Enhancers	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
18	nsv886023	chr6:66039601-66103595	Enhancers	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
19	nsv886024	chr6:66039601-66201364	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
20	nsv886025	chr6:66050797-66192399	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
21	nsv603435	chr6:66052294-66091351	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
22	nsv462981	chr6:66052294-66115654	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
23	nsv603436	chr6:66052294-66115654	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
24	nsv462982	chr6:66052294-66122359	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
25	nsv603437	chr6:66052294-66122359	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
26	nsv1015632	chr6:66056747-66114121	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:66061400-66062200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:66061600-66061800	Enhancers	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links