Variant report

Variant	rs552559898
Chromosome Location	chr6:106981743-106981744
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:106973098..106973851-chr6:106981648..106982148,2	Hela-S3	cervix:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932155	chr6:106281728-107030467	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv532047	chr6:106591482-107143252	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv870375	chr6:106696090-107047892	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
4	nsv1025510	chr6:106791080-106982400	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv538404	chr6:106791080-106982400	Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	esv15497	chr6:106981224-106982723	Genic enhancers Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:106961000-107001400	Weak transcription	Gastric	stomach
2	chr6:106964800-106991000	Weak transcription	Spleen	Spleen
3	chr6:106964800-107029800	Weak transcription	Small Intestine	intestine
4	chr6:106970600-107022400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:106973400-106985600	Weak transcription	Stomach Mucosa	stomach
6	chr6:106973600-106985800	Weak transcription	Thymus	Thymus
7	chr6:106973600-106986000	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr6:106973600-106992800	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr6:106974600-106982400	Strong transcription	Primary hematopoietic stem cells	blood
10	chr6:106974800-106982600	Strong transcription	Rectal Mucosa Donor 29	rectum
11	chr6:106975000-106983400	Strong transcription	Rectal Mucosa Donor 31	rectum
12	chr6:106975200-106983000	Strong transcription	Adipose Nuclei	Adipose
13	chr6:106976000-106983200	Strong transcription	Duodenum Mucosa	Duodenum
14	chr6:106976200-106982800	Strong transcription	Sigmoid Colon	Sigmoid Colon
15	chr6:106976400-106986200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr6:106976600-106982000	Genic enhancers	Primary T helper cells PMA-I stimulated	--
17	chr6:106976600-106991400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:106977000-106986400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr6:106978000-106982400	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr6:106978600-106983400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr6:106978800-106981800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr6:106978800-106984200	Weak transcription	NH-A	brain
23	chr6:106978800-106985600	Weak transcription	Fetal Thymus	thymus
24	chr6:106978800-106993800	Weak transcription	NHLF	lung
25	chr6:106979000-106982200	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr6:106979000-107001400	Weak transcription	Pancreas	Pancrea
27	chr6:106979200-106982000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr6:106979400-106982200	Weak transcription	HUVEC	blood vessel
29	chr6:106979600-106984200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr6:106979600-106987200	Weak transcription	HepG2	liver
31	chr6:106980000-106982400	Strong transcription	Rectal Smooth Muscle	rectum
32	chr6:106980200-106983000	Genic enhancers	Primary B cells from peripheral blood	blood
33	chr6:106980200-106984400	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr6:106980400-106982800	Enhancers	Primary neutrophils fromperipheralblood	blood
35	chr6:106980800-106981800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr6:106980800-106981800	Genic enhancers	NHDF-Ad	bronchial
37	chr6:106980800-106982000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr6:106980800-106982200	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
39	chr6:106980800-106982200	Strong transcription	Dnd41	blood
40	chr6:106980800-106982400	Enhancers	Placenta	Placenta
41	chr6:106980800-106982800	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
42	chr6:106980800-106982800	Genic enhancers	Primary T helper cells fromperipheralblood	blood
43	chr6:106980800-106982800	Genic enhancers	GM12878-XiMat	blood
44	chr6:106980800-106983200	Genic enhancers	Primary monocytes fromperipheralblood	blood
45	chr6:106980800-106983400	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
46	chr6:106980800-106984400	Genic enhancers	HMEC	breast
47	chr6:106980800-106986200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr6:106980800-106986400	Strong transcription	Liver	Liver
49	chr6:106981000-106981800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr6:106981000-106981800	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood

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