Variant report

Variant	rs552571710
Chromosome Location	chr19:42058621-42058622
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ATP5SL-2	chr19:42057938-42058639	NONHSAT066473

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv911770	chr19:41962486-42066279	Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv911771	chr19:41962486-42085873	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv911772	chr19:41985624-42066279	Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv911773	chr19:42001210-42085873	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv978751	chr19:42036596-42073874	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1057624	chr19:42057334-42152828	Transcr. at gene 5' and 3' Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv1058847	chr19:42057334-42172442	Bivalent/Poised TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv1063241	chr19:42057334-42175160	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv579603	chr19:42058025-42062131	Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:42055000-42059200	Flanking Active TSS	Primary B cells from cord blood	blood
2	chr19:42055200-42059200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr19:42055600-42058800	Active TSS	Colonic Mucosa	Colon
4	chr19:42055600-42059000	Weak transcription	Spleen	Spleen
5	chr19:42055600-42059200	Active TSS	Duodenum Mucosa	Duodenum
6	chr19:42055600-42059200	Active TSS	Sigmoid Colon	Sigmoid Colon
7	chr19:42055600-42059400	Active TSS	Primary T killer naive cells fromperipheralblood	blood
8	chr19:42055600-42059400	Active TSS	Rectal Mucosa Donor 29	rectum
9	chr19:42055600-42059600	Active TSS	Primary T helper naive cells from peripheral blood	blood
10	chr19:42055600-42059600	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
11	chr19:42055600-42059800	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
12	chr19:42055800-42058800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr19:42055800-42059200	Active TSS	Primary T cells from cord blood	blood
14	chr19:42055800-42060000	Active TSS	Primary T killer memory cells from peripheral blood	blood
15	chr19:42056000-42058800	Active TSS	Brain Hippocampus Middle	brain
16	chr19:42056200-42058800	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr19:42056200-42060400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr19:42056400-42059400	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr19:42056400-42059600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr19:42056600-42060200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr19:42057000-42061000	Weak transcription	HUVEC	blood vessel
22	chr19:42057200-42058800	Transcr. at gene 5' and 3'	Primary B cells from peripheral blood	blood
23	chr19:42057600-42058800	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells short term culture	blood
24	chr19:42057600-42060000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
25	chr19:42057800-42059600	Transcr. at gene 5' and 3'	Primary Natural Killer cells fromperipheralblood	blood
26	chr19:42057800-42060800	Flanking Active TSS	GM12878-XiMat	blood
27	chr19:42058000-42059000	Transcr. at gene 5' and 3'	Primary T cells fromperipheralblood	blood
28	chr19:42058000-42061200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
29	chr19:42058000-42069600	Weak transcription	Pancreas	Pancrea
30	chr19:42058200-42059600	Active TSS	Thymus	Thymus
31	chr19:42058200-42060000	Enhancers	Primary hematopoietic stem cells	blood
32	chr19:42058400-42058800	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr19:42058400-42058800	Enhancers	Adipose Nuclei	Adipose
34	chr19:42058400-42059000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
35	chr19:42058400-42059000	Enhancers	Monocytes-CD14+_RO01746	blood
36	chr19:42058400-42059200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
37	chr19:42058400-42059400	Active TSS	Primary T helper naive cells fromperipheralblood	blood
38	chr19:42058400-42059400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
39	chr19:42058400-42059600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr19:42058600-42058800	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
41	chr19:42058600-42059000	Flanking Active TSS	Fetal Thymus	thymus

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