The 2.0 version of rSNPBase

Variant report

Variant rs552612617
Chromosome Location chr19:38241890-38241891
allele -/G
Outlinks Ensembl   UCSC
Chromatin state (count:85 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:38230800-38251400 Weak transcription Pancreas Pancrea
2 chr19:38230800-38252600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
3 chr19:38230800-38259800 Weak transcription Fetal Thymus thymus
4 chr19:38231000-38246600 Weak transcription Left Ventricle heart
5 chr19:38231000-38246800 Weak transcription Brain Germinal Matrix brain
6 chr19:38231000-38250400 Weak transcription Brain Substantia Nigra brain
7 chr19:38231000-38258200 Weak transcription Brain Anterior Caudate brain
8 chr19:38231000-38258400 Weak transcription Fetal Kidney kidney
9 chr19:38231000-38258800 Weak transcription Brain Cingulate Gyrus brain
10 chr19:38231000-38260400 Weak transcription Placenta Amnion Placenta Amnion
11 chr19:38231400-38250600 Weak transcription Stomach Smooth Muscle stomach
12 chr19:38231400-38255800 Weak transcription Skeletal Muscle Male skeletal muscle
13 chr19:38231400-38259400 Weak transcription Rectal Smooth Muscle rectum
14 chr19:38231400-38259800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
15 chr19:38231800-38245800 Weak transcription Muscle Satellite Cultured Cells --
16 chr19:38231800-38253200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
17 chr19:38231800-38257600 Weak transcription HSMM muscle
18 chr19:38231800-38258200 Weak transcription HSMMtube muscle
19 chr19:38231800-38269200 Weak transcription Fetal Brain Male brain
20 chr19:38232200-38250600 Weak transcription Fetal Muscle Trunk muscle
21 chr19:38232200-38253000 Weak transcription Colon Smooth Muscle Colon
22 chr19:38232400-38242800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
23 chr19:38232400-38243200 Weak transcription Rectal Mucosa Donor 29 rectum
24 chr19:38232400-38252000 Weak transcription Primary T killer memory cells from peripheral blood blood
25 chr19:38232400-38253600 Weak transcription Right Ventricle heart
26 chr19:38232400-38254000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
27 chr19:38232400-38255600 Weak transcription Psoas Muscle Psoas
28 chr19:38232400-38256600 Weak transcription Dnd41 blood
29 chr19:38235200-38250600 Weak transcription Gastric stomach
30 chr19:38235200-38253200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
31 chr19:38235400-38251400 Weak transcription Breast Myoepithelial Primary Cells Breast
32 chr19:38235400-38252800 Weak transcription Brain Hippocampus Middle brain
33 chr19:38235600-38250800 Weak transcription Fetal Stomach stomach
34 chr19:38235600-38251400 Weak transcription Fetal Muscle Leg muscle
35 chr19:38236400-38269400 Weak transcription Aorta Aorta
36 chr19:38236600-38249000 Weak transcription Fetal Intestine Small intestine
37 chr19:38236600-38250400 Weak transcription HUES6 Cell Line embryonic stem cell
38 chr19:38236600-38250400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
39 chr19:38236800-38243200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
40 chr19:38237000-38260400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
41 chr19:38237400-38242800 Weak transcription Primary T helper naive cells from peripheral blood blood
42 chr19:38237400-38252600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
43 chr19:38237400-38252800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
44 chr19:38237600-38243200 Weak transcription Cortex derived primary cultured neurospheres brain
45 chr19:38237800-38246800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
46 chr19:38238400-38243200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
47 chr19:38238400-38250600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
48 chr19:38238400-38250600 Weak transcription Primary B cells from peripheral blood blood
49 chr19:38238600-38243400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
50 chr19:38238800-38242800 Weak transcription Primary T killer naive cells fromperipheralblood blood

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Last update: Aug 31, 2015