Variant report

Variant	rs552634038
Chromosome Location	chr3:137805375-137805376
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530056	chr3:137312356-138161861	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv2757890	chr3:137611789-137933835	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	esv2759180	chr3:137611789-137933835	Enhancers Active TSS Genic enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	esv2751978	chr3:137715302-137890750	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1007857	chr3:137767454-137843106	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1002136	chr3:137776151-137806500	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv10329	chr3:137803343-137807116	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:137780000-137813400	Weak transcription	HUVEC	blood vessel
2	chr3:137780600-137811600	Weak transcription	Psoas Muscle	Psoas
3	chr3:137781000-137833200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr3:137783200-137811600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr3:137783200-137821200	Weak transcription	Colonic Mucosa	Colon
6	chr3:137785400-137805600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr3:137787600-137806600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr3:137792000-137820600	Weak transcription	Esophagus	oesophagus
9	chr3:137792400-137818200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr3:137796200-137811400	Weak transcription	Fetal Brain Male	brain
11	chr3:137801400-137805400	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr3:137801600-137820600	Weak transcription	Spleen	Spleen
13	chr3:137801600-137833200	Weak transcription	Brain Cingulate Gyrus	brain
14	chr3:137801800-137807800	Weak transcription	NHEK	skin
15	chr3:137801800-137812600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr3:137801800-137815200	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr3:137802200-137818200	Weak transcription	Hela-S3	cervix
18	chr3:137802400-137813200	Weak transcription	Primary hematopoietic stem cells	blood
19	chr3:137802400-137823200	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr3:137802600-137808800	Weak transcription	Duodenum Mucosa	Duodenum
21	chr3:137802600-137822200	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr3:137803000-137805400	Weak transcription	Fetal Heart	heart
23	chr3:137803200-137812200	Weak transcription	Brain Angular Gyrus	brain
24	chr3:137803200-137812800	Weak transcription	Fetal Brain Female	brain
25	chr3:137803200-137815600	Weak transcription	Brain Substantia Nigra	brain
26	chr3:137803200-137833200	Weak transcription	Placenta	Placenta
27	chr3:137803400-137806200	Weak transcription	HSMMtube	muscle
28	chr3:137803400-137807000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr3:137803400-137812600	Weak transcription	Brain Germinal Matrix	brain
30	chr3:137803400-137820200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr3:137803400-137822400	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr3:137803600-137805400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr3:137803600-137805600	Weak transcription	Fetal Kidney	kidney
34	chr3:137803600-137816200	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr3:137803800-137805400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr3:137803800-137813000	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr3:137803800-137813600	Weak transcription	Liver	Liver
38	chr3:137804000-137805400	Weak transcription	Stomach Smooth Muscle	stomach
39	chr3:137805000-137805800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr3:137805000-137806600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr3:137805000-137808000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr3:137805200-137805400	ZNF genes & repeats	Fetal Muscle Leg	muscle
43	chr3:137805200-137805600	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
44	chr3:137805200-137805800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr3:137805200-137805800	Strong transcription	H9 Cell Line	embryonic stem cell
46	chr3:137805200-137805800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr3:137805200-137805800	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr3:137805200-137805800	ZNF genes & repeats	Aorta	Aorta
49	chr3:137805200-137805800	Strong transcription	Colon Smooth Muscle	Colon
50	chr3:137805200-137805800	Strong transcription	Fetal Intestine Small	intestine

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