Variant report

Variant	rs552650998
Chromosome Location	chr10:1139218-1139219
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:1137427..1142070-chr10:1143618..1146472,4	K562	blood:
2	chr10:1127362..1131200-chr10:1136115..1140089,4	MCF-7	breast:
3	chr10:1138483..1141096-chr10:1142458..1145457,2	MCF-7	breast:
4	chr10:1136192..1139242-chr10:1140283..1143968,3	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv540386	chr10:224406-1197416	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv530116	chr10:776548-1401075	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv1052540	chr10:887562-1300134	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv540407	chr10:887562-1300134	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv533861	chr10:945438-1382068	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
6	nsv530117	chr10:945438-1729634	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
7	nsv540408	chr10:955835-1260680	Enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
8	nsv817532	chr10:964660-1885945	Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
9	nsv1050577	chr10:986723-1277854	Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
10	nsv540409	chr10:986723-1277854	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
11	nsv949405	chr10:1010464-1376105	Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
12	nsv1048254	chr10:1016006-1146595	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
13	nsv894722	chr10:1058837-1274538	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
14	nsv1046220	chr10:1064024-1188998	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
15	nsv894723	chr10:1073684-1259485	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
16	nsv894725	chr10:1110464-1421516	Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
17	nsv1054432	chr10:1115626-1230431	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
18	nsv1041498	chr10:1117200-1760190	Genic enhancers Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
19	esv3372800	chr10:1138652-1143250	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:1108600-1142400	Weak transcription	Stomach Mucosa	stomach
2	chr10:1108600-1144600	Weak transcription	Fetal Heart	heart
3	chr10:1117400-1141400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr10:1117800-1168600	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr10:1118000-1156400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr10:1118000-1168400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
7	chr10:1118000-1173800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr10:1121400-1154400	Strong transcription	Primary T cells fromperipheralblood	blood
9	chr10:1122200-1168400	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr10:1122600-1168800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr10:1123000-1168600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr10:1123200-1145200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:1123200-1145800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr10:1123200-1155200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr10:1123200-1155800	Strong transcription	Dnd41	blood
16	chr10:1123200-1178400	Strong transcription	Liver	Liver
17	chr10:1123400-1147800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr10:1123400-1155400	Strong transcription	Placenta	Placenta
19	chr10:1123400-1177800	Strong transcription	Primary B cells from peripheral blood	blood
20	chr10:1123800-1155600	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr10:1123800-1156000	Strong transcription	Primary T cells from cord blood	blood
22	chr10:1124200-1178000	Strong transcription	Primary B cells from cord blood	blood
23	chr10:1124400-1155800	Strong transcription	Primary T helper cells PMA-I stimulated	--
24	chr10:1127800-1148200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr10:1127800-1153000	Strong transcription	Fetal Muscle Leg	muscle
26	chr10:1127800-1156200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr10:1127800-1179000	Strong transcription	Fetal Stomach	stomach
28	chr10:1128000-1155400	Strong transcription	Rectal Mucosa Donor 29	rectum
29	chr10:1128000-1155400	Strong transcription	Sigmoid Colon	Sigmoid Colon
30	chr10:1128000-1156400	Strong transcription	Fetal Intestine Small	intestine
31	chr10:1128200-1156200	Strong transcription	Fetal Intestine Large	intestine
32	chr10:1128200-1156400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr10:1129400-1179000	Strong transcription	Primary neutrophils fromperipheralblood	blood
34	chr10:1129800-1144000	Strong transcription	HUES48 Cell Line	embryonic stem cell
35	chr10:1130000-1155800	Strong transcription	NHEK	skin
36	chr10:1133000-1139600	Weak transcription	Psoas Muscle	Psoas
37	chr10:1133000-1148000	Strong transcription	Lung	lung
38	chr10:1133000-1151200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr10:1133000-1155800	Weak transcription	A549	lung
40	chr10:1133200-1141000	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr10:1133200-1154400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr10:1133600-1139400	Weak transcription	NHDF-Ad	bronchial
43	chr10:1134000-1139400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr10:1134600-1139600	Weak transcription	Fetal Kidney	kidney
45	chr10:1135000-1142000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr10:1135600-1148800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr10:1136000-1139400	Weak transcription	HMEC	breast
48	chr10:1136000-1139600	Weak transcription	Ovary	ovary
49	chr10:1136000-1156400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr10:1136600-1142000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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