Variant report

Variant	rs552664912
Chromosome Location	chr15:74701981-74701982
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:74698106..74700226-chr15:74701422..74703511,2	MCF-7	breast:
2	chr15:74687537..74689333-chr15:74700401..74702548,2	MCF-7	breast:
3	chr15:74700131..74703007-chr15:74725422..74727638,2	MCF-7	breast:
4	chr15:74698476..74700326-chr15:74700408..74702340,3	MCF-7	breast:
5	chr15:74694161..74696547-chr15:74701258..74703158,2	K562	blood:

Variant related genes	Relation type
ENSG00000138623	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428641	chr15:74555113-74724630	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
2	nsv482615	chr15:74593625-74757962	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
3	nsv904352	chr15:74638965-74715205	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
4	nsv904353	chr15:74697084-74716609	Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv904354	chr15:74697084-74722924	Enhancers Genic enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv904355	chr15:74697084-74728149	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	11 gene(s)	inside rSNPs	diseases
7	nsv904356	chr15:74697084-74729603	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	11 gene(s)	inside rSNPs	diseases
8	nsv569974	chr15:74701200-74727113	Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	11 gene(s)	inside rSNPs	diseases
9	esv3331807	chr15:74701299-74703447	Weak transcription Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74689400-74702400	Weak transcription	Gastric	stomach
2	chr15:74696200-74702600	Weak transcription	Lung	lung
3	chr15:74696200-74710400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr15:74696200-74711400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr15:74696200-74712600	Weak transcription	Right Atrium	heart
6	chr15:74696400-74702400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr15:74696400-74707000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr15:74696400-74712200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr15:74696600-74703600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr15:74696600-74706200	Weak transcription	Primary T cells from cord blood	blood
11	chr15:74696800-74702600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr15:74696800-74709400	Weak transcription	Left Ventricle	heart
13	chr15:74697000-74702800	Weak transcription	Dnd41	blood
14	chr15:74697000-74705400	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr15:74697000-74712400	Weak transcription	Fetal Heart	heart
16	chr15:74697000-74712600	Weak transcription	Fetal Lung	lung
17	chr15:74697200-74702400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr15:74697200-74705200	Weak transcription	Primary hematopoietic stem cells	blood
19	chr15:74697800-74702000	Enhancers	NH-A	brain
20	chr15:74698000-74702000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr15:74698000-74702600	Genic enhancers	Muscle Satellite Cultured Cells	--
22	chr15:74698200-74704400	Weak transcription	Primary B cells from cord blood	blood
23	chr15:74698400-74702400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr15:74699000-74702400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr15:74699600-74706200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr15:74699600-74716600	Weak transcription	Fetal Kidney	kidney
27	chr15:74699800-74702000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
28	chr15:74699800-74702400	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr15:74699800-74702600	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr15:74699800-74702600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr15:74699800-74704600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr15:74700000-74702800	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr15:74700000-74713800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr15:74700200-74702400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr15:74700200-74702400	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr15:74700200-74702400	Weak transcription	Brain Anterior Caudate	brain
37	chr15:74700200-74703000	Weak transcription	HepG2	liver
38	chr15:74700200-74703400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr15:74700200-74704400	Weak transcription	K562	blood
40	chr15:74700200-74707000	Weak transcription	Esophagus	oesophagus
41	chr15:74700200-74707400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr15:74700200-74708400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr15:74700200-74708400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr15:74700200-74711200	Weak transcription	Fetal Intestine Large	intestine
45	chr15:74700400-74702400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr15:74700400-74702400	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr15:74700400-74702400	Weak transcription	Brain Substantia Nigra	brain
48	chr15:74700400-74702800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr15:74700400-74703000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr15:74700400-74703000	Enhancers	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links