Variant report

Variant	rs552680806
Chromosome Location	chr2:113856124-113856125
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532471	chr2:113682449-113862981	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv997348	chr2:113688093-113986508	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1007254	chr2:113726982-113887782	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv535894	chr2:113726982-113887782	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv1003928	chr2:113846503-113887782	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv3323154	chr2:113855481-113859679	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113855200-113856400	Enhancers	Primary T helper naive cells from peripheral blood	blood
2	chr2:113855400-113856200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
3	chr2:113855800-113856200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr2:113855800-113856200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr2:113855800-113856200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
6	chr2:113855800-113856200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
7	chr2:113855800-113856200	Enhancers	Lung	lung
8	chr2:113855800-113856400	Enhancers	Primary B cells from peripheral blood	blood
9	chr2:113855800-113856400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr2:113855800-113856400	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr2:113855800-113856400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr2:113855800-113856400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr2:113855800-113856600	Enhancers	Primary T cells fromperipheralblood	blood
14	chr2:113855800-113857200	Enhancers	Esophagus	oesophagus
15	chr2:113856000-113856200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
16	chr2:113856000-113856400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
17	chr2:113856000-113856400	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr2:113856000-113856600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr2:113856000-113856600	Enhancers	GM12878-XiMat	blood
20	chr2:113856000-113857000	Enhancers	Spleen	Spleen

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links