Variant report

Variant	rs552691479
Chromosome Location	chr9:116397380-116397381
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:116383167..116386391-chr9:116389906..116398638,8	MCF-7	breast:
2	chr9:116392305..116395161-chr9:116397306..116400059,2	MCF-7	breast:
3	chr9:116396277..116398394-chr9:116409096..116411903,2	MCF-7	breast:
4	chr9:116395680..116398027-chr9:116408814..116410400,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530949	chr9:115821128-116487796	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv893748	chr9:116308709-116421786	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
4	nsv466510	chr9:116363877-116397397	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv615217	chr9:116363877-116397397	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv466511	chr9:116374990-116397397	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv615219	chr9:116374990-116397397	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv893749	chr9:116378759-116439749	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	esv2560176	chr9:116397318-116399163	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116385800-116402600	Weak transcription	Stomach Mucosa	stomach
2	chr9:116389800-116402800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr9:116392600-116399000	Enhancers	Fetal Muscle Leg	muscle
4	chr9:116393400-116397400	Enhancers	NHLF	lung
5	chr9:116393400-116399400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr9:116393600-116398400	Enhancers	Osteobl	bone
7	chr9:116393600-116399000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr9:116393800-116398800	Enhancers	Fetal Stomach	stomach
9	chr9:116394400-116397600	Enhancers	Fetal Heart	heart
10	chr9:116394600-116399000	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr9:116394800-116398400	Enhancers	HUVEC	blood vessel
12	chr9:116395000-116398600	Enhancers	Fetal Muscle Trunk	muscle
13	chr9:116395200-116398800	Enhancers	Fetal Lung	lung
14	chr9:116395600-116398000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr9:116396000-116398600	Enhancers	NH-A	brain
16	chr9:116396000-116398800	Enhancers	Psoas Muscle	Psoas
17	chr9:116396000-116399200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr9:116396200-116397400	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
19	chr9:116396200-116398400	Enhancers	HSMMtube	muscle
20	chr9:116396200-116398800	Enhancers	Right Atrium	heart
21	chr9:116396200-116398800	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr9:116396200-116399000	Enhancers	Adipose Nuclei	Adipose
23	chr9:116396200-116399000	Enhancers	HSMM	muscle
24	chr9:116396200-116399400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr9:116396200-116399400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr9:116396400-116397400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
27	chr9:116396400-116397400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
28	chr9:116396400-116397600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr9:116396400-116398200	Enhancers	Liver	Liver
30	chr9:116396400-116398800	Enhancers	Left Ventricle	heart
31	chr9:116396800-116397600	Weak transcription	Lung	lung
32	chr9:116396800-116397800	Enhancers	A549	lung
33	chr9:116396800-116398000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr9:116396800-116398200	Enhancers	Right Ventricle	heart
35	chr9:116396800-116398600	Enhancers	Muscle Satellite Cultured Cells	--
36	chr9:116396800-116398600	Enhancers	Ovary	ovary
37	chr9:116396800-116398800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr9:116397000-116397400	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr9:116397000-116397400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
40	chr9:116397000-116397400	Enhancers	Fetal Kidney	kidney
41	chr9:116397000-116397800	Enhancers	Duodenum Smooth Muscle	Duodenum
42	chr9:116397000-116398000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr9:116397000-116399600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr9:116397200-116397400	Enhancers	H9 Cell Line	embryonic stem cell
45	chr9:116397200-116397800	Enhancers	Colon Smooth Muscle	Colon
46	chr9:116397200-116397800	Flanking Active TSS	HepG2	liver
47	chr9:116397200-116398400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr9:116397200-116398600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr9:116397200-116398800	Enhancers	Skeletal Muscle Male	skeletal muscle
50	chr9:116397200-116400400	Weak transcription	Rectal Smooth Muscle	rectum

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