Variant report

Variant	rs552741183
Chromosome Location	chr3:146185040-146185041
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:146139318..146141303-chr3:146183434..146185764,2	MCF-7	breast:
2	chr3:146176309..146178627-chr3:146183394..146185507,2	K562	blood:

Variant related genes	Relation type
ENSG00000163746	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877618	chr3:146096182-146192324	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv877622	chr3:146131961-146219740	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3409148	chr3:146184258-146185130	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146181600-146185200	Enhancers	NHDF-Ad	bronchial
2	chr3:146181600-146185800	Weak transcription	K562	blood
3	chr3:146181600-146187000	Enhancers	Muscle Satellite Cultured Cells	--
4	chr3:146182400-146185200	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr3:146182600-146185200	Enhancers	A549	lung
6	chr3:146182600-146186000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:146183000-146186200	Weak transcription	Fetal Stomach	stomach
8	chr3:146183000-146187000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr3:146183000-146187000	Weak transcription	HMEC	breast
10	chr3:146183000-146187000	Weak transcription	NHEK	skin
11	chr3:146183400-146185800	Weak transcription	Fetal Heart	heart
12	chr3:146183600-146186000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr3:146183600-146187000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr3:146183800-146185400	Enhancers	NHLF	lung
15	chr3:146184000-146185200	Enhancers	Osteobl	bone
16	chr3:146184000-146186200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr3:146184000-146187000	Weak transcription	Right Atrium	heart
18	chr3:146184200-146186800	Weak transcription	Esophagus	oesophagus
19	chr3:146184200-146186800	Weak transcription	Pancreas	Pancrea
20	chr3:146184200-146187000	Weak transcription	Aorta	Aorta
21	chr3:146184200-146187000	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr3:146184400-146186000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr3:146184800-146185600	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr3:146184800-146186000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr3:146185000-146185800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr3:146185000-146186000	Weak transcription	Hela-S3	cervix
27	chr3:146185000-146186200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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