Variant report

Variant	rs552742582
Chromosome Location	chr13:54785289-54785290
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3375545	chr13:54517432-54908108	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv561701	chr13:54711276-54826104	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1051063	chr13:54777487-54997866	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv541778	chr13:54777487-54997866	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1046376	chr13:54785036-54827801	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:54782600-54786800	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr13:54783200-54785400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr13:54784400-54785400	Enhancers	NHEK	skin
4	chr13:54784400-54785600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr13:54784600-54785400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr13:54784600-54785400	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr13:54784600-54785400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr13:54784600-54785400	Enhancers	HMEC	breast
9	chr13:54784600-54785600	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr13:54784600-54785600	Enhancers	Placenta	Placenta
11	chr13:54784600-54786400	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr13:54784800-54785400	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr13:54784800-54785800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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