Variant report

Variant	rs552780716
Chromosome Location	chr9:136755386-136755387
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:136754690..136760274-chr9:136856094..136858875,6	MCF-7	breast:
2	chr9:136754087..136756664-chr9:136788614..136790293,2	MCF-7	breast:
3	chr9:136744004..136756386-chr9:136850728..136860313,29	MCF-7	breast:

Variant related genes	Relation type
ENSG00000160293	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894114	chr9:136538798-136779153	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv831745	chr9:136593702-136780273	Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv894122	chr9:136632662-136760639	Enhancers Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1035272	chr9:136665308-136772256	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv894123	chr9:136682408-136852501	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv894124	chr9:136716399-136870787	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	nsv894125	chr9:136723520-136931957	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
8	nsv894126	chr9:136747832-136779153	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv894127	chr9:136747832-136811772	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv615708	chr9:136753246-136757253	Weak transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv615709	chr9:136753246-136758586	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	esv1801832	chr9:136753246-136759587	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	esv1798102	chr9:136753246-136771319	Genic enhancers Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	esv1832030	chr9:136753246-136785840	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	esv1829795	chr9:136753246-136787253	Enhancers Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	nsv894128	chr9:136753246-136906752	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
17	nsv894129	chr9:136754076-136779153	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	esv3403453	chr9:136755356-136758104	Genic enhancers Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:136729600-136780000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr9:136729800-136762600	Weak transcription	Right Ventricle	heart
3	chr9:136736000-136760000	Weak transcription	Primary B cells from cord blood	blood
4	chr9:136736800-136756200	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr9:136740200-136757400	Weak transcription	Duodenum Mucosa	Duodenum
6	chr9:136745800-136755600	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr9:136747600-136780800	Weak transcription	Right Atrium	heart
8	chr9:136748200-136762200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr9:136748400-136758000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr9:136748800-136770600	Weak transcription	Esophagus	oesophagus
11	chr9:136749200-136756000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr9:136749600-136756000	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr9:136749800-136756000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr9:136750000-136756200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr9:136750600-136755600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr9:136750800-136756400	Enhancers	Liver	Liver
17	chr9:136751000-136755400	Weak transcription	Spleen	Spleen
18	chr9:136751000-136756000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr9:136751200-136755800	Genic enhancers	Fetal Intestine Small	intestine
20	chr9:136751200-136756000	Enhancers	H1 Cell Line	embryonic stem cell
21	chr9:136751400-136755600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr9:136751600-136755400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr9:136751600-136755600	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr9:136751600-136755600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr9:136751600-136755600	Enhancers	Fetal Brain Male	brain
26	chr9:136751600-136756000	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr9:136751600-136756000	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr9:136751600-136768200	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr9:136752000-136755400	Enhancers	Brain Germinal Matrix	brain
30	chr9:136752000-136755400	Enhancers	Fetal Brain Female	brain
31	chr9:136752200-136755800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr9:136752200-136756000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr9:136753000-136755400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
34	chr9:136753000-136755400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr9:136753000-136756200	Enhancers	NH-A	brain
36	chr9:136753000-136813200	Weak transcription	Aorta	Aorta
37	chr9:136753200-136755400	Enhancers	Brain Anterior Caudate	brain
38	chr9:136753200-136755600	Enhancers	Brain Cingulate Gyrus	brain
39	chr9:136753200-136755600	Enhancers	Brain Substantia Nigra	brain
40	chr9:136753200-136756000	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr9:136753200-136756200	Enhancers	Breast Myoepithelial Primary Cells	Breast
42	chr9:136753400-136755800	Strong transcription	Primary B cells from peripheral blood	blood
43	chr9:136753400-136756000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
44	chr9:136753600-136755400	Enhancers	Stomach Mucosa	stomach
45	chr9:136753600-136757600	Weak transcription	Lung	lung
46	chr9:136753800-136756000	Strong transcription	Gastric	stomach
47	chr9:136753800-136757000	Enhancers	HepG2	liver
48	chr9:136753800-136762400	Weak transcription	Adipose Nuclei	Adipose
49	chr9:136754000-136755800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr9:136754000-136756000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links