Variant report
| Variant | rs552784074 |
|---|---|
| Chromosome Location | chr19:45062523-45062524 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr19:45003124..45004626-chr19:45062170..45065011,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000167384 | Chromatin interaction |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1062812 | chr19:45042262-45214796 | Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 20 gene(s) | inside rSNPs | diseases |
| 2 | esv3357953 | chr19:45061712-45063710 | Inactive region | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 3 | esv3428859 | chr19:45062305-45062699 | Inactive region | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | esv3443702 | chr19:45062342-45062552 | Inactive region | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | esv3420965 | chr19:45062356-45062637 | Inactive region | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 6 | esv3381739 | chr19:45062418-45062628 | Inactive region | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 7 | esv1393126 | chr19:45062495-45062597 | Inactive region | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
