Variant report

Variant	rs552795654
Chromosome Location	chr9:96340086-96340087
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:101964530..101966057-chr9:96338377..96341052,2	MCF-7	breast:
2	chr9:96207292..96208805-chr9:96339241..96341688,2	MCF-7	breast:
3	chr9:95818234..95820974-chr9:96339140..96341685,2	MCF-7	breast:
4	chr15:64672393..64674955-chr9:96338463..96341441,2	MCF-7	breast:
5	chr9:96213158..96214882-chr9:96338001..96341678,3	K562	blood:
6	chr9:96211528..96214948-chr9:96337573..96343441,10	MCF-7	breast:
7	chr9:96211672..96218862-chr9:96335264..96341672,16	MCF-7	breast:
8	chr9:96298295..96300963-chr9:96339660..96341258,2	MCF-7	breast:
9	chr9:95895154..95898000-chr9:96338001..96340609,3	MCF-7	breast:
10	chr9:95856094..95858375-chr9:96337008..96340445,3	MCF-7	breast:
11	chr8:144819610..144821971-chr9:96337841..96340310,2	MCF-7	breast:
12	chr9:96289339..96291734-chr9:96339194..96341014,2	MCF-7	breast:
13	chr9:96328414..96329044-chr9:96339964..96340763,2	MCF-7	breast:
14	chr9:95894803..95898160-chr9:96337820..96340366,3	MCF-7	breast:
15	chr9:96323290..96325963-chr9:96339113..96341830,2	MCF-7	breast:
16	chr9:96214499..96217099-chr9:96338317..96340265,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000166803	Chromatin interaction
ENSG00000131669	Chromatin interaction
ENSG00000048828	Chromatin interaction
ENSG00000223446	Chromatin interaction
ENSG00000203499	Chromatin interaction
ENSG00000188938	Chromatin interaction
ENSG00000164924	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041803	chr9:96299639-96342013	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv824984	chr9:96310933-96375022	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv824985	chr9:96337735-96340349	Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
4	esv3359621	chr9:96337881-96340629	Bivalent/Poised TSS Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
5	esv3422729	chr9:96337956-96340504	Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96337600-96340200	Active TSS	Aorta	Aorta
2	chr9:96337600-96340400	Active TSS	H9 Cell Line	embryonic stem cell
3	chr9:96337600-96340400	Active TSS	Fetal Kidney	kidney
4	chr9:96337600-96340600	Active TSS	HSMMtube	muscle
5	chr9:96337600-96341000	Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr9:96337800-96340200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr9:96337800-96340200	Active TSS	Small Intestine	intestine
8	chr9:96337800-96340400	Active TSS	iPS-15b Cell Line	embryonic stem cell
9	chr9:96338000-96340200	Active TSS	Lung	lung
10	chr9:96338000-96340200	Active TSS	NHLF	lung
11	chr9:96338000-96341000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr9:96339400-96340200	Active TSS	Duodenum Smooth Muscle	Duodenum
13	chr9:96339400-96340200	Active TSS	Placenta Amnion	Placenta Amnion
14	chr9:96339400-96340400	Flanking Active TSS	Primary B cells from cord blood	blood
15	chr9:96339400-96340600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
16	chr9:96339600-96340200	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
17	chr9:96339600-96340400	Flanking Active TSS	Spleen	Spleen
18	chr9:96339600-96340600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr9:96339600-96340600	Flanking Active TSS	Primary hematopoietic stem cells	blood
20	chr9:96339600-96340600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
21	chr9:96339600-96340600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr9:96339600-96340800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
23	chr9:96339800-96340200	Flanking Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr9:96339800-96340200	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
25	chr9:96339800-96340200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
26	chr9:96339800-96340200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
27	chr9:96339800-96340200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
28	chr9:96339800-96340200	Flanking Active TSS	Fetal Brain Male	brain
29	chr9:96339800-96340200	Flanking Active TSS	Sigmoid Colon	Sigmoid Colon
30	chr9:96339800-96340400	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr9:96339800-96340400	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
32	chr9:96339800-96340400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
33	chr9:96339800-96340400	Flanking Active TSS	Primary B cells from peripheral blood	blood
34	chr9:96339800-96340400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
35	chr9:96339800-96340400	Flanking Active TSS	Liver	Liver
36	chr9:96339800-96340400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
37	chr9:96339800-96340400	Flanking Active TSS	K562	blood
38	chr9:96339800-96340400	Flanking Active TSS	Osteobl	bone
39	chr9:96339800-96340600	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr9:96339800-96340600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
41	chr9:96339800-96340600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
42	chr9:96339800-96340600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
43	chr9:96339800-96340600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
44	chr9:96339800-96340600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
45	chr9:96339800-96340600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
46	chr9:96339800-96340600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
47	chr9:96339800-96340600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
48	chr9:96339800-96340600	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr9:96339800-96340600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr9:96339800-96340600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links