Variant report

Variant	rs552800981
Chromosome Location	chr18:28773063-28773064
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3360998	chr18:28693111-28881812	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3317366	chr18:28771236-28776023	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv3317367	chr18:28771244-28776059	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv3317368	chr18:28771329-28775927	Flanking Active TSS Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv20999	chr18:28771340-28775873	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28769200-28773200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr18:28770400-28773400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr18:28770600-28773200	Enhancers	NHEK	skin
4	chr18:28770800-28773600	Enhancers	Placenta Amnion	Placenta Amnion
5	chr18:28771000-28789000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr18:28771200-28778800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr18:28771400-28783000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr18:28772400-28773400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr18:28772600-28777200	Weak transcription	HMEC	breast
10	chr18:28772600-28777400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr18:28772800-28773400	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr18:28772800-28773400	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr18:28772800-28773600	Enhancers	H9 Cell Line	embryonic stem cell
14	chr18:28773000-28773600	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr18:28773000-28777000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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