Variant report

Variant	rs552811406
Chromosome Location	chr11:45907403-45907404
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:45868641..45870553-chr11:45905537..45909020,4	K562	blood:
2	chr11:45904999..45908778-chr11:45926674..45929138,4	MCF-7	breast:
3	chr11:45892807..45894535-chr11:45907209..45909004,2	K562	blood:
4	chr11:45867854..45870393-chr11:45906869..45909551,2	MCF-7	breast:
5	chr11:45868680..45870553-chr11:45907106..45909020,2	K562	blood:
6	chr11:45906755..45908288-chr11:45937921..45939853,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000121680	Chromatin interaction
ENSG00000234776	Chromatin interaction
ENSG00000121671	Chromatin interaction
ENSG00000255498	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897314	chr11:45816020-45965129	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv1047462	chr11:45898630-45953696	Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv516442	chr11:45899962-45983385	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	esv1794798	chr11:45903280-45953636	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	esv3435139	chr11:45906376-45908374	Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Weak transcription Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45906400-45907800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
2	chr11:45906600-45907600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:45906600-45907600	Active TSS	Primary T cells from cord blood	blood
4	chr11:45906600-45907600	Enhancers	Stomach Mucosa	stomach
5	chr11:45906600-45907600	Bivalent/Poised TSS	HSMMtube	muscle
6	chr11:45906600-45907800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr11:45906600-45908000	Active TSS	iPS-20b Cell Line	embryonic stem cell
8	chr11:45906600-45908000	Active TSS	Fetal Brain Female	brain
9	chr11:45906600-45908200	Active TSS	iPS-15b Cell Line	embryonic stem cell
10	chr11:45906600-45908200	Active TSS	Brain Angular Gyrus	brain
11	chr11:45906600-45908400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
12	chr11:45906600-45908400	Active TSS	Pancreatic Islets	Pancreatic Islet
13	chr11:45906800-45907600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr11:45906800-45907600	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr11:45906800-45907600	Active TSS	Colon Smooth Muscle	Colon
16	chr11:45906800-45907600	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
17	chr11:45906800-45907600	Enhancers	Placenta Amnion	Placenta Amnion
18	chr11:45906800-45907600	Active TSS	Right Atrium	heart
19	chr11:45906800-45907600	Active TSS	A549	lung
20	chr11:45906800-45907600	Active TSS	HMEC	breast
21	chr11:45906800-45907600	Active TSS	HSMM	muscle
22	chr11:45906800-45907600	Active TSS	NHLF	lung
23	chr11:45906800-45907800	Active TSS	H1 Cell Line	embryonic stem cell
24	chr11:45906800-45907800	Active TSS	iPS-18 Cell Line	embryonic stem cell
25	chr11:45906800-45907800	Active TSS	HepG2	liver
26	chr11:45906800-45908200	Active TSS	H9 Cell Line	embryonic stem cell
27	chr11:45906800-45908200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
28	chr11:45907000-45907600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr11:45907000-45907600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
30	chr11:45907000-45907600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr11:45907000-45907600	Active TSS	Breast Myoepithelial Primary Cells	Breast
32	chr11:45907000-45907600	Active TSS	Primary T helper naive cells fromperipheralblood	blood
33	chr11:45907000-45907600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr11:45907000-45907600	Active TSS	Adipose Nuclei	Adipose
35	chr11:45907000-45907600	Enhancers	Liver	Liver
36	chr11:45907000-45907600	Active TSS	Brain Cingulate Gyrus	brain
37	chr11:45907000-45907600	Active TSS	Duodenum Smooth Muscle	Duodenum
38	chr11:45907000-45907600	Active TSS	Rectal Mucosa Donor 31	rectum
39	chr11:45907000-45907600	Active TSS	Rectal Smooth Muscle	rectum
40	chr11:45907000-45907600	Active TSS	Right Ventricle	heart
41	chr11:45907000-45907600	Active TSS	Sigmoid Colon	Sigmoid Colon
42	chr11:45907000-45907600	Active TSS	Skeletal Muscle Female	skeletal muscle
43	chr11:45907000-45907600	Bivalent/Poised TSS	Small Intestine	intestine
44	chr11:45907000-45907600	Active TSS	GM12878-XiMat	blood
45	chr11:45907000-45907600	Active TSS	Hela-S3	cervix
46	chr11:45907000-45907600	Active TSS	NH-A	brain
47	chr11:45907000-45907600	Bivalent/Poised TSS	Osteobl	bone
48	chr11:45907000-45907800	Enhancers	Primary T helper naive cells from peripheral blood	blood
49	chr11:45907000-45907800	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
50	chr11:45907000-45907800	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood

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