Variant report

Variant	rs552879055
Chromosome Location	chr19:44622312-44622313
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:44617932..44619858-chr19:44621419..44624363,2	K562	blood:
2	chr19:44617932..44619818-chr19:44621419..44624956,3	K562	blood:
3	chr19:44619756..44622526-chr19:44648791..44651550,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000256294	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833840	chr19:44520620-44715760	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv963059	chr19:44621739-44622714	Strong transcription Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44618200-44624400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr19:44618200-44635000	Weak transcription	Stomach Mucosa	stomach
3	chr19:44618400-44629200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr19:44618600-44622400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr19:44618600-44622600	Weak transcription	Esophagus	oesophagus
6	chr19:44618600-44623000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr19:44618600-44623400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr19:44618600-44623400	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr19:44618600-44631400	Weak transcription	NHEK	skin
10	chr19:44618600-44635000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr19:44618800-44622400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr19:44618800-44622400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr19:44618800-44622400	Weak transcription	HepG2	liver
14	chr19:44618800-44622600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr19:44618800-44623200	Weak transcription	GM12878-XiMat	blood
16	chr19:44618800-44623400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr19:44618800-44623600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr19:44618800-44635000	Weak transcription	HMEC	breast
19	chr19:44619000-44623400	Weak transcription	Fetal Heart	heart
20	chr19:44619000-44633600	Weak transcription	HUVEC	blood vessel
21	chr19:44619400-44622600	Strong transcription	Primary hematopoietic stem cells	blood
22	chr19:44619600-44623800	Strong transcription	A549	lung
23	chr19:44619600-44624800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
24	chr19:44619600-44624800	Strong transcription	Brain Angular Gyrus	brain
25	chr19:44619600-44625600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr19:44619600-44625800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr19:44619600-44626000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr19:44619600-44626200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr19:44619600-44627200	Strong transcription	Primary T helper cells fromperipheralblood	blood
30	chr19:44619600-44629200	Strong transcription	Brain Inferior Temporal Lobe	brain
31	chr19:44619600-44630400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr19:44619600-44633200	Strong transcription	Skeletal Muscle Female	skeletal muscle
33	chr19:44619600-44637200	Strong transcription	Cortex derived primary cultured neurospheres	brain
34	chr19:44619600-44638600	ZNF genes & repeats	Liver	Liver
35	chr19:44619800-44622800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr19:44619800-44623400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr19:44619800-44623400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr19:44619800-44624000	Strong transcription	Primary monocytes fromperipheralblood	blood
39	chr19:44619800-44624200	Strong transcription	Fetal Lung	lung
40	chr19:44619800-44624200	Strong transcription	Fetal Stomach	stomach
41	chr19:44619800-44624400	Strong transcription	Gastric	stomach
42	chr19:44619800-44624400	Strong transcription	Skeletal Muscle Male	skeletal muscle
43	chr19:44619800-44624400	Strong transcription	Monocytes-CD14+_RO01746	blood
44	chr19:44619800-44624800	Strong transcription	HUES48 Cell Line	embryonic stem cell
45	chr19:44619800-44624800	Strong transcription	Brain Cingulate Gyrus	brain
46	chr19:44619800-44624800	Strong transcription	Rectal Mucosa Donor 29	rectum
47	chr19:44619800-44625000	Strong transcription	Brain Germinal Matrix	brain
48	chr19:44619800-44625200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr19:44619800-44625400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr19:44619800-44625400	Strong transcription	Thymus	Thymus

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