Variant report

Variant	rs552882276
Chromosome Location	chr5:119844165-119844166
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532200	chr5:119317901-120102513	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv830463	chr5:119806643-119968825	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv462427	chr5:119838923-119928674	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv599601	chr5:119838923-119928674	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1031453	chr5:119843593-120393038	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:119818200-119845600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr5:119836400-119852400	Weak transcription	HSMM	muscle
3	chr5:119839800-119879800	Weak transcription	Psoas Muscle	Psoas
4	chr5:119842600-119852400	Weak transcription	Aorta	Aorta
5	chr5:119842800-119844200	Enhancers	Fetal Lung	lung
6	chr5:119843000-119844200	Enhancers	Muscle Satellite Cultured Cells	--
7	chr5:119843000-119844400	Flanking Active TSS	NHDF-Ad	bronchial
8	chr5:119843200-119844200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr5:119843200-119844400	Enhancers	NHLF	lung
10	chr5:119843400-119844800	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr5:119843400-119845200	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr5:119843400-119848000	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr5:119843600-119844200	Enhancers	K562	blood
14	chr5:119843600-119844400	Enhancers	H1 Cell Line	embryonic stem cell
15	chr5:119843600-119844600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
16	chr5:119843600-119845200	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr5:119843600-119845200	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr5:119843600-119845400	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr5:119843800-119844200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
20	chr5:119843800-119844200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr5:119843800-119846200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr5:119844000-119845000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr5:119844000-119845000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr5:119844000-119845800	Weak transcription	Osteobl	bone
25	chr5:119844000-119846000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr5:119844000-119846600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr5:119844000-119847800	Weak transcription	H9 Cell Line	embryonic stem cell

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