Variant report

Variant	rs552914896
Chromosome Location	chr11:75091620-75091621
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:75062379..75064704-chr11:75090478..75092323,2	MCF-7	breast:
2	chr11:75090369..75092612-chr11:75094388..75097255,4	MCF-7	breast:
3	chr11:75090671..75094563-chr11:75095690..75099742,4	K562	blood:

Variant related genes	Relation type
ENSG00000137486	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041640	chr11:74945824-75174688	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	94 gene(s)	inside rSNPs	diseases
2	nsv832211	chr11:74945839-75106125	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
3	nsv897920	chr11:75087520-75181249	Genic enhancers Bivalent Enhancer Active TSS Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	esv993873	chr11:75090965-75093952	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75081200-75095200	Weak transcription	Dnd41	blood
2	chr11:75081400-75091800	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr11:75083600-75094200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr11:75083800-75091800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:75083800-75092000	Weak transcription	Adipose Nuclei	Adipose
6	chr11:75083800-75099400	Weak transcription	Right Atrium	heart
7	chr11:75084000-75091800	Weak transcription	Liver	Liver
8	chr11:75085000-75091800	Weak transcription	Hela-S3	cervix
9	chr11:75087000-75091800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr11:75087400-75099400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr11:75087800-75091800	Weak transcription	Colonic Mucosa	Colon
12	chr11:75087800-75091800	Weak transcription	Spleen	Spleen
13	chr11:75089800-75092400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr11:75089800-75092600	Enhancers	Fetal Intestine Large	intestine
15	chr11:75089800-75093000	Enhancers	Fetal Intestine Small	intestine
16	chr11:75090200-75092200	Enhancers	Fetal Stomach	stomach
17	chr11:75090200-75092400	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr11:75090200-75092800	Enhancers	Rectal Mucosa Donor 29	rectum
19	chr11:75090400-75091800	Weak transcription	Lung	lung
20	chr11:75090400-75096000	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr11:75090800-75092200	Enhancers	Duodenum Mucosa	Duodenum
22	chr11:75090800-75092200	Enhancers	Stomach Smooth Muscle	stomach
23	chr11:75090800-75093000	Enhancers	Placenta	Placenta
24	chr11:75091000-75092000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr11:75091000-75092400	Enhancers	Fetal Heart	heart
26	chr11:75091000-75092400	Enhancers	Fetal Muscle Leg	muscle
27	chr11:75091200-75093000	Enhancers	Stomach Mucosa	stomach
28	chr11:75091400-75092200	Enhancers	HSMM	muscle
29	chr11:75091400-75092400	Enhancers	Placenta Amnion	Placenta Amnion
30	chr11:75091400-75092400	Enhancers	A549	lung
31	chr11:75091400-75094200	Enhancers	Monocytes-CD14+_RO01746	blood
32	chr11:75091400-75096000	Enhancers	Primary monocytes fromperipheralblood	blood
33	chr11:75091600-75091800	Flanking Active TSS	HepG2	liver
34	chr11:75091600-75092000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr11:75091600-75092000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr11:75091600-75092000	Enhancers	Duodenum Smooth Muscle	Duodenum
37	chr11:75091600-75092000	Enhancers	Gastric	stomach
38	chr11:75091600-75092200	Enhancers	HSMMtube	muscle
39	chr11:75091600-75092400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr11:75091600-75092400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr11:75091600-75092400	Enhancers	Primary hematopoietic stem cells	blood
42	chr11:75091600-75092400	Enhancers	Sigmoid Colon	Sigmoid Colon
43	chr11:75091600-75092400	Enhancers	K562	blood
44	chr11:75091600-75092600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr11:75091600-75092600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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