Variant report

Variant rs552917170
Chromosome Location chr6:30851753-30851754
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:120 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:30848600-30852000 Enhancers NH-A brain
2 chr6:30848800-30851800 Flanking Active TSS Brain Germinal Matrix brain
3 chr6:30849200-30852000 Flanking Active TSS Cortex derived primary cultured neurospheres brain
4 chr6:30849200-30852200 Enhancers Fetal Heart heart
5 chr6:30849400-30851800 Flanking Active TSS H1 Cell Line embryonic stem cell
6 chr6:30849400-30851800 Enhancers NHLF lung
7 chr6:30849600-30851800 Flanking Active TSS H9 Derived Neuron Cultured Cells ES cell derived
8 chr6:30849800-30851800 Enhancers Fetal Brain Male brain
9 chr6:30850000-30851800 Enhancers Brain Angular Gyrus brain
10 chr6:30850000-30851800 Weak transcription Osteobl bone
11 chr6:30850000-30853000 Active TSS H9 Cell Line embryonic stem cell
12 chr6:30850200-30851800 Flanking Active TSS Ganglion Eminence derived primary cultured neurospheres brain
13 chr6:30850200-30851800 Flanking Active TSS Fetal Intestine Small intestine
14 chr6:30850200-30852200 Enhancers Primary T killer naive cells fromperipheralblood blood
15 chr6:30850200-30852800 Active TSS Gastric stomach
16 chr6:30850400-30851800 Enhancers Left Ventricle heart
17 chr6:30850400-30851800 Genic enhancers Right Atrium heart
18 chr6:30850400-30852600 Active TSS Sigmoid Colon Sigmoid Colon
19 chr6:30850400-30852800 Active TSS iPS DF 6.9 Cell Line embryonic stem cell
20 chr6:30850400-30853000 Active TSS Breast Myoepithelial Primary Cells Breast
21 chr6:30850400-30853200 Active TSS Rectal Smooth Muscle rectum
22 chr6:30850600-30851800 Flanking Active TSS hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
23 chr6:30850600-30852000 Flanking Active TSS Skeletal Muscle Male skeletal muscle
24 chr6:30850600-30852600 Active TSS Pancreas Pancrea
25 chr6:30850600-30852600 Weak transcription NHDF-Ad bronchial
26 chr6:30850600-30853000 Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
27 chr6:30850600-30853000 Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
28 chr6:30850600-30853200 Active TSS ES-I3 Cell Line embryonic stem cell
29 chr6:30850600-30854600 Active TSS Pancreatic Islets Pancreatic Islet
30 chr6:30850800-30851800 Flanking Active TSS H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
31 chr6:30850800-30851800 Flanking Active TSS iPS DF 19.11 Cell Line embryonic stem cell
32 chr6:30850800-30851800 Flanking Active TSS Primary T cells from cord blood blood
33 chr6:30850800-30851800 Flanking Active TSS Brain Anterior Caudate brain
34 chr6:30850800-30851800 Flanking Active TSS Fetal Lung lung
35 chr6:30850800-30851800 Flanking Active TSS Placenta Amnion Placenta Amnion
36 chr6:30850800-30851800 Flanking Active TSS Hela-S3 cervix
37 chr6:30850800-30851800 Flanking Active TSS K562 blood
38 chr6:30850800-30852000 Flanking Active TSS Primary T helper naive cells fromperipheralblood blood
39 chr6:30850800-30852000 Flanking Active TSS Colonic Mucosa Colon
40 chr6:30850800-30852000 Flanking Active TSS Fetal Brain Female brain
41 chr6:30850800-30852000 Flanking Active TSS Placenta Placenta
42 chr6:30850800-30852000 Flanking Active TSS Fetal Stomach stomach
43 chr6:30850800-30852000 Flanking Active TSS Fetal Thymus thymus
44 chr6:30850800-30852000 Flanking Active TSS Skeletal Muscle Female skeletal muscle
45 chr6:30850800-30852000 Flanking Active TSS GM12878-XiMat blood
46 chr6:30850800-30854200 Active TSS H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
47 chr6:30850800-30854400 Active TSS ES-WA7 Cell Line embryonic stem cell
48 chr6:30851000-30851800 Flanking Active TSS ES-UCSF4 Cell Line embryonic stem cell
49 chr6:30851000-30851800 Flanking Active TSS Brain Dorsolateral Prefrontal Cortex brain
50 chr6:30851000-30851800 Flanking Active TSS Rectal Mucosa Donor 29 rectum

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