Variant report

Variant	rs552920257
Chromosome Location	chr2:212769913-212769914
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34128	chr2:212581485-212857122	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv834525	chr2:212693190-212860356	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv584323	chr2:212731514-212783175	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv584324	chr2:212766614-212773932	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv584325	chr2:212768779-212772954	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv584326	chr2:212768779-212773495	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv584327	chr2:212768779-212773569	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
8	esv1848923	chr2:212768779-212774540	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
9	esv1847998	chr2:212768779-212774751	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
10	esv1851182	chr2:212768779-212774751	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212765600-212771400	Weak transcription	Brain Substantia Nigra	brain
2	chr2:212766400-212771600	Weak transcription	Brain Anterior Caudate	brain
3	chr2:212769200-212772000	Weak transcription	Fetal Heart	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links