Variant report

Variant	rs552926697
Chromosome Location	chr10:49597286-49597287
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:49596329..49598626-chr10:49641274..49643307,2	K562	blood:
2	chr10:49590873..49596805-chr10:49597234..49602162,8	K562	blood:
3	chr10:49597219..49599872-chr10:49602103..49604352,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1039508	chr10:49595718-49654403	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49587600-49599600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:49590200-49598400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr10:49590200-49598800	Weak transcription	A549	lung
4	chr10:49590200-49599600	Weak transcription	Pancreas	Pancrea
5	chr10:49590400-49598600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr10:49590400-49599000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr10:49591400-49599600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr10:49591800-49599000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr10:49592000-49597600	Weak transcription	HUVEC	blood vessel
10	chr10:49592200-49597400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr10:49592400-49597600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr10:49592600-49597400	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr10:49592600-49597600	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr10:49592800-49597400	Weak transcription	HMEC	breast
15	chr10:49593000-49597400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr10:49593000-49598000	Weak transcription	Right Atrium	heart
17	chr10:49593000-49599000	Weak transcription	Primary hematopoietic stem cells	blood
18	chr10:49593200-49597600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr10:49593200-49599000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr10:49593200-49607600	Weak transcription	Fetal Lung	lung
21	chr10:49593400-49597400	Weak transcription	Colon Smooth Muscle	Colon
22	chr10:49593400-49597400	Weak transcription	HSMMtube	muscle
23	chr10:49593400-49599000	Weak transcription	HSMM	muscle
24	chr10:49593600-49597400	Weak transcription	Fetal Kidney	kidney
25	chr10:49593600-49598800	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr10:49595000-49599400	Weak transcription	Brain Cingulate Gyrus	brain
27	chr10:49595000-49616000	Weak transcription	Primary B cells from cord blood	blood
28	chr10:49596200-49597600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr10:49596400-49599600	Enhancers	Fetal Intestine Large	intestine
30	chr10:49596400-49599800	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr10:49596400-49600000	Enhancers	Primary T helper cells PMA-I stimulated	--
32	chr10:49596600-49601200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
33	chr10:49596800-49597600	Enhancers	Right Ventricle	heart
34	chr10:49596800-49598200	Enhancers	Ovary	ovary
35	chr10:49596800-49598800	Enhancers	Left Ventricle	heart
36	chr10:49596800-49598800	Enhancers	Psoas Muscle	Psoas
37	chr10:49596800-49600000	Enhancers	Primary T helper cells fromperipheralblood	blood
38	chr10:49596800-49600000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr10:49596800-49600200	Enhancers	Sigmoid Colon	Sigmoid Colon
40	chr10:49596800-49600400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
41	chr10:49596800-49600400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
42	chr10:49597000-49597600	Weak transcription	Fetal Intestine Small	intestine
43	chr10:49597000-49597800	Enhancers	Primary T killer memory cells from peripheral blood	blood
44	chr10:49597200-49597600	Flanking Active TSS	K562	blood
45	chr10:49597200-49597800	Enhancers	NHDF-Ad	bronchial
46	chr10:49597200-49598600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr10:49597200-49598600	Enhancers	Fetal Heart	heart
48	chr10:49597200-49599200	Enhancers	GM12878-XiMat	blood
49	chr10:49597200-49600200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
50	chr10:49597200-49600600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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