The 2.0 version of rSNPBase

Variant report

Variant rs552947494
Chromosome Location chr2:234095062-234095063
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:82 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:234053800-234110800 Strong transcription Primary T helper naive cells fromperipheralblood blood
2 chr2:234053800-234113800 Strong transcription Primary T cells from cord blood blood
3 chr2:234053800-234118000 Strong transcription Primary T regulatory cells fromperipheralblood blood
4 chr2:234054400-234110600 Weak transcription Small Intestine intestine
5 chr2:234055200-234113400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
6 chr2:234058600-234105400 Weak transcription Rectal Smooth Muscle rectum
7 chr2:234062000-234108400 Weak transcription Brain Inferior Temporal Lobe brain
8 chr2:234074200-234111200 Weak transcription Brain Substantia Nigra brain
9 chr2:234074600-234122000 Strong transcription Primary mononuclear cells fromperipheralblood Blood
10 chr2:234074800-234101000 Strong transcription Primary hematopoietic stem cells blood
11 chr2:234075000-234100000 Weak transcription HUVEC blood vessel
12 chr2:234075200-234111800 Weak transcription Rectal Mucosa Donor 31 rectum
13 chr2:234075200-234117000 Strong transcription Primary T helper cells PMA-I stimulated --
14 chr2:234075400-234111200 Strong transcription Primary T helper cells fromperipheralblood blood
15 chr2:234075400-234113800 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
16 chr2:234075400-234115200 Strong transcription Primary T cells fromperipheralblood blood
17 chr2:234077200-234117200 Strong transcription Primary T helper 17 cells PMA-I stimulated --
18 chr2:234077800-234106400 Weak transcription HUES48 Cell Line embryonic stem cell
19 chr2:234078200-234110000 Weak transcription iPS-15b Cell Line embryonic stem cell
20 chr2:234078800-234098600 Weak transcription Skeletal Muscle Female skeletal muscle
21 chr2:234079200-234095600 Weak transcription Right Ventricle heart
22 chr2:234081000-234097800 Weak transcription Colonic Mucosa Colon
23 chr2:234084800-234097800 Weak transcription Skeletal Muscle Male skeletal muscle
24 chr2:234085200-234107200 Strong transcription Thymus Thymus
25 chr2:234086800-234099600 Strong transcription Rectal Mucosa Donor 29 rectum
26 chr2:234087000-234096600 Strong transcription Primary T killer naive cells fromperipheralblood blood
27 chr2:234087200-234095600 Strong transcription HMEC breast
28 chr2:234087600-234096000 Strong transcription Primary T killer memory cells from peripheral blood blood
29 chr2:234087600-234096400 Strong transcription Primary T helper memory cells from peripheral blood 2 blood
30 chr2:234088600-234098600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
31 chr2:234089000-234099000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
32 chr2:234089000-234101200 Strong transcription Dnd41 blood
33 chr2:234089000-234102400 Weak transcription H1 Cell Line embryonic stem cell
34 chr2:234089000-234111200 Weak transcription Duodenum Smooth Muscle Duodenum
35 chr2:234089000-234111400 Weak transcription Fetal Muscle Leg muscle
36 chr2:234089200-234095800 Weak transcription iPS-20b Cell Line embryonic stem cell
37 chr2:234089200-234097600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
38 chr2:234089200-234111400 Weak transcription Left Ventricle heart
39 chr2:234089400-234097600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
40 chr2:234089400-234111000 Strong transcription Fetal Thymus thymus
41 chr2:234089800-234100200 Weak transcription H9 Cell Line embryonic stem cell
42 chr2:234089800-234106000 Weak transcription Fetal Intestine Small intestine
43 chr2:234090200-234101000 Strong transcription Placenta Placenta
44 chr2:234090200-234113800 Strong transcription Primary T helper naive cells from peripheral blood blood
45 chr2:234090800-234096400 Strong transcription Breast Myoepithelial Primary Cells Breast
46 chr2:234090800-234099600 Strong transcription Sigmoid Colon Sigmoid Colon
47 chr2:234091400-234111200 Weak transcription HUES6 Cell Line embryonic stem cell
48 chr2:234091800-234096000 Genic enhancers Primary monocytes fromperipheralblood blood
49 chr2:234091800-234111200 Weak transcription Stomach Smooth Muscle stomach
50 chr2:234092000-234101000 Strong transcription Primary T helper memory cells from peripheral blood 1 blood

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Last update: Aug 31, 2015