Variant report

Variant	rs552948439
Chromosome Location	chr3:49179401-49179402
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876764	chr3:49040462-49245645	Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	279 gene(s)	inside rSNPs	diseases
2	nsv834686	chr3:49106047-49270556	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
3	esv3343248	chr3:49177848-49180746	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49172200-49200400	Weak transcription	Colon Smooth Muscle	Colon
2	chr3:49178800-49179600	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
3	chr3:49178800-49179600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:49178800-49179800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr3:49178800-49179800	ZNF genes & repeats	Placenta	Placenta
6	chr3:49179000-49179800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr3:49179000-49179800	Enhancers	Esophagus	oesophagus
8	chr3:49179200-49179800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr3:49179200-49179800	Enhancers	Right Ventricle	heart
10	chr3:49179400-49179800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:49179400-49179800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr3:49179400-49182600	Weak transcription	Thymus	Thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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