Variant report

Variant	rs552968127
Chromosome Location	chr3:133950832-133950833
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:133948864..133950989-chr3:133968171..133969773,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163785	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3522171	chr3:133889405-134156571	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3522172	chr3:133889405-134156571	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	esv1794616	chr3:133949713-133973731	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
4	esv1798974	chr3:133949713-133973731	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
5	esv1802675	chr3:133949713-133973731	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
6	esv1815799	chr3:133949713-133973731	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
7	esv1819695	chr3:133949713-133973731	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
8	esv1822126	chr3:133949713-133973731	Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
9	esv1839030	chr3:133949713-133973731	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133930000-133954600	Weak transcription	Brain Cingulate Gyrus	brain
2	chr3:133930200-133955000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr3:133930200-133968000	Weak transcription	Fetal Kidney	kidney
4	chr3:133930600-133957800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr3:133932400-133951000	Weak transcription	NHLF	lung
6	chr3:133935400-133954600	Weak transcription	HUVEC	blood vessel
7	chr3:133938800-133955200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr3:133941000-133954600	Weak transcription	Duodenum Mucosa	Duodenum
9	chr3:133941000-133954800	Weak transcription	Fetal Intestine Large	intestine
10	chr3:133941000-133961600	Weak transcription	Esophagus	oesophagus
11	chr3:133941400-133957200	Weak transcription	Fetal Stomach	stomach
12	chr3:133941400-133967400	Weak transcription	Fetal Muscle Leg	muscle
13	chr3:133942000-133951000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr3:133942000-133952600	Weak transcription	Brain Angular Gyrus	brain
15	chr3:133943200-133954600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr3:133943400-133961800	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr3:133943600-133957800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr3:133943600-133957800	Weak transcription	Lung	lung
19	chr3:133947000-133955200	Weak transcription	Fetal Intestine Small	intestine
20	chr3:133947200-133957200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr3:133947200-133957800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr3:133947400-133952600	Weak transcription	Rectal Smooth Muscle	rectum
23	chr3:133948600-133954600	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr3:133948800-133951000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr3:133948800-133951200	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr3:133949000-133951800	Enhancers	Psoas Muscle	Psoas
27	chr3:133949400-133952000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
28	chr3:133949400-133952000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr3:133949800-133959600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr3:133950000-133951000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr3:133950000-133951200	Enhancers	Thymus	Thymus
32	chr3:133950000-133951200	Enhancers	Osteobl	bone
33	chr3:133950000-133951400	Enhancers	Adipose Nuclei	Adipose
34	chr3:133950000-133951400	Enhancers	HSMM	muscle
35	chr3:133950000-133951600	Enhancers	HMEC	breast
36	chr3:133950000-133951800	Enhancers	HSMMtube	muscle
37	chr3:133950000-133951800	Enhancers	NHDF-Ad	bronchial
38	chr3:133950000-133952000	Enhancers	Primary T cells from cord blood	blood
39	chr3:133950000-133952200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
40	chr3:133950000-133952200	Enhancers	Primary T helper cells PMA-I stimulated	--
41	chr3:133950000-133952200	Enhancers	Primary T helper cells fromperipheralblood	blood
42	chr3:133950200-133951000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr3:133950200-133951000	Enhancers	Stomach Mucosa	stomach
44	chr3:133950200-133951200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
45	chr3:133950200-133951200	Enhancers	Fetal Heart	heart
46	chr3:133950200-133951400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr3:133950200-133951400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr3:133950200-133951600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr3:133950200-133951800	Enhancers	Breast Myoepithelial Primary Cells	Breast
50	chr3:133950200-133951800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links