Variant report

Variant	rs552992796
Chromosome Location	chr7:112578836-112578837
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
2	esv1794529	chr7:112400060-112588376	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	esv2754368	chr7:112483049-112588049	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2758131	chr7:112492127-112768628	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv2759556	chr7:112492127-112768628	Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	esv3692941	chr7:112571420-112614215	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
7	esv1795316	chr7:112577657-112588734	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
8	nsv1027981	chr7:112577657-112613212	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112551600-112579400	Weak transcription	Spleen	Spleen
2	chr7:112575600-112579200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr7:112576800-112580800	Active TSS	Left Ventricle	heart
4	chr7:112577200-112579200	Flanking Active TSS	Dnd41	blood
5	chr7:112577400-112579200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr7:112577400-112580800	Active TSS	Right Ventricle	heart
7	chr7:112577600-112579200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr7:112577600-112580200	Active TSS	Right Atrium	heart
9	chr7:112577600-112580600	Active TSS	Brain Angular Gyrus	brain
10	chr7:112577600-112580800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr7:112577600-112581000	Active TSS	Fetal Brain Female	brain
12	chr7:112577600-112581400	Active TSS	Aorta	Aorta
13	chr7:112577800-112580600	Active TSS	HSMMtube	muscle
14	chr7:112578000-112579000	Flanking Active TSS	HMEC	breast
15	chr7:112578000-112579200	Flanking Active TSS	Primary T cells from cord blood	blood
16	chr7:112578000-112580600	Active TSS	Brain Anterior Caudate	brain
17	chr7:112578000-112580600	Active TSS	Brain Inferior Temporal Lobe	brain
18	chr7:112578000-112580800	Active TSS	NHLF	lung
19	chr7:112578000-112581000	Active TSS	Brain Germinal Matrix	brain
20	chr7:112578200-112579000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
21	chr7:112578200-112579200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
22	chr7:112578200-112579200	Flanking Active TSS	Duodenum Mucosa	Duodenum
23	chr7:112578200-112579400	Flanking Active TSS	Primary hematopoietic stem cells	blood
24	chr7:112578200-112579400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
25	chr7:112578200-112579400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
26	chr7:112578200-112580400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr7:112578200-112580600	Active TSS	Fetal Heart	heart
28	chr7:112578200-112580800	Active TSS	HUES6 Cell Line	embryonic stem cell
29	chr7:112578200-112581000	Active TSS	H1 Cell Line	embryonic stem cell
30	chr7:112578400-112579000	Flanking Active TSS	Brain Hippocampus Middle	brain
31	chr7:112578400-112579000	Flanking Active TSS	Colon Smooth Muscle	Colon
32	chr7:112578400-112579000	Flanking Active TSS	Rectal Smooth Muscle	rectum
33	chr7:112578400-112579000	Flanking Active TSS	K562	blood
34	chr7:112578400-112579200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
35	chr7:112578400-112579200	Flanking Active TSS	NH-A	brain
36	chr7:112578400-112580400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr7:112578400-112580400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr7:112578400-112580400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr7:112578400-112580400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr7:112578400-112580400	Active TSS	Fetal Stomach	stomach
41	chr7:112578400-112580400	Active TSS	GM12878-XiMat	blood
42	chr7:112578400-112580600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr7:112578400-112580600	Active TSS	Fetal Intestine Large	intestine
44	chr7:112578400-112580600	Active TSS	Fetal Intestine Small	intestine
45	chr7:112578400-112580800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr7:112578400-112581000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr7:112578600-112579000	Flanking Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr7:112578600-112579000	Flanking Active TSS	NHEK	skin
49	chr7:112578600-112579200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
50	chr7:112578600-112579200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood

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