The 2.0 version of rSNPBase

Variant report

Variant rs552993697
Chromosome Location chr5:107338920-107338921
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:45 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:107319800-107354000 Weak transcription Primary B cells from cord blood blood
2 chr5:107327400-107353400 Weak transcription Aorta Aorta
3 chr5:107338400-107339000 Active TSS Osteobl bone
4 chr5:107338400-107339400 Flanking Active TSS Dnd41 blood
5 chr5:107338400-107339600 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
6 chr5:107338600-107339200 Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
7 chr5:107338600-107339200 Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
8 chr5:107338600-107339200 Enhancers Primary T killer naive cells fromperipheralblood blood
9 chr5:107338600-107339200 Flanking Active TSS HUVEC blood vessel
10 chr5:107338600-107339400 Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
11 chr5:107338600-107339800 Enhancers Primary T helper cells PMA-I stimulated --
12 chr5:107338800-107339000 Enhancers Primary T cells from cord blood blood
13 chr5:107338800-107339000 Active TSS Muscle Satellite Cultured Cells --
14 chr5:107338800-107339000 Active TSS Adipose Nuclei Adipose
15 chr5:107338800-107339000 Flanking Active TSS Liver Liver
16 chr5:107338800-107339000 Active TSS Fetal Adrenal Gland Adrenal Gland
17 chr5:107338800-107339000 ZNF genes & repeats Fetal Brain Male brain
18 chr5:107338800-107339200 Active TSS IMR90 fetal lung fibroblasts Cell Line lung
19 chr5:107338800-107339200 Enhancers Primary monocytes fromperipheralblood blood
20 chr5:107338800-107339200 Flanking Active TSS Primary T helper memory cells from peripheral blood 1 blood
21 chr5:107338800-107339200 Enhancers Primary T helper cells fromperipheralblood blood
22 chr5:107338800-107339200 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
23 chr5:107338800-107339200 Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
24 chr5:107338800-107339200 Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
25 chr5:107338800-107339200 Active TSS Duodenum Mucosa Duodenum
26 chr5:107338800-107339200 Flanking Active TSS Pancreatic Islets Pancreatic Islet
27 chr5:107338800-107339200 Enhancers Left Ventricle heart
28 chr5:107338800-107339200 Active TSS Ovary ovary
29 chr5:107338800-107339200 Active TSS Rectal Mucosa Donor 29 rectum
30 chr5:107338800-107339200 Active TSS Right Atrium heart
31 chr5:107338800-107339200 Enhancers Sigmoid Colon Sigmoid Colon
32 chr5:107338800-107339200 Enhancers Small Intestine intestine
33 chr5:107338800-107339200 Flanking Active TSS Hela-S3 cervix
34 chr5:107338800-107339200 Active TSS HSMMtube muscle
35 chr5:107338800-107339200 Flanking Active TSS Monocytes-CD14+_RO01746 blood
36 chr5:107338800-107339200 Active TSS NHLF lung
37 chr5:107338800-107339400 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
38 chr5:107338800-107339400 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
39 chr5:107338800-107339400 Active TSS Duodenum Smooth Muscle Duodenum
40 chr5:107338800-107339400 Active TSS Fetal Lung lung
41 chr5:107338800-107339400 Flanking Active TSS GM12878-XiMat blood
42 chr5:107338800-107339400 Active TSS NHDF-Ad bronchial
43 chr5:107338800-107339600 Enhancers Primary T helper memory cells from peripheral blood 2 blood
44 chr5:107338800-107339600 Enhancers Primary T helper naive cells from peripheral blood blood
45 chr5:107338800-107339600 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --

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Last update: Aug 31, 2015