Variant report

Variant	rs553001938
Chromosome Location	chr4:54960471-54960472
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879018	chr4:54714753-55030375	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv1003167	chr4:54732051-55081905	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv537096	chr4:54732051-55081905	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv594202	chr4:54943432-55011123	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv594203	chr4:54960005-55030375	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54958600-54960600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
2	chr4:54958800-54960600	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
3	chr4:54958800-54962800	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr4:54958800-54965800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr4:54959000-54960600	Weak transcription	HSMMtube	muscle
6	chr4:54959000-54964400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr4:54959400-54960800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
8	chr4:54959600-54965600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
9	chr4:54959800-54961600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
10	chr4:54960000-54960600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
11	chr4:54960200-54960600	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
12	chr4:54960200-54965800	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr4:54960200-54965800	Weak transcription	Pancreas	Pancrea
14	chr4:54960400-54960800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
15	chr4:54960400-54960800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
16	chr4:54960400-54960800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
17	chr4:54960400-54961000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
18	chr4:54960400-54961200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
19	chr4:54960400-54962000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links