Variant report

Variant	rs553004907
Chromosome Location	chr7:25354247-25354248
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:25300355..25300946-chr7:25353811..25354586,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606424	chr7:24982529-25466521	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv606426	chr7:25254125-25621579	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1028018	chr7:25351950-25371700	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
4	nsv464409	chr7:25352809-25371700	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
5	nsv464410	chr7:25354077-25371700	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
6	nsv606427	chr7:25354077-25371700	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25339600-25355000	Weak transcription	Fetal Brain Male	brain
2	chr7:25344600-25357200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr7:25349000-25354600	Weak transcription	Fetal Lung	lung
4	chr7:25350600-25354600	Weak transcription	Colon Smooth Muscle	Colon
5	chr7:25351000-25358400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr7:25351400-25357200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr7:25351600-25358200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr7:25352600-25354600	Enhancers	Pancreas	Pancrea
9	chr7:25352600-25355600	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr7:25352600-25356200	Enhancers	Fetal Intestine Large	intestine
11	chr7:25352600-25357200	Enhancers	Fetal Intestine Small	intestine
12	chr7:25353000-25355600	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr7:25353200-25354800	Enhancers	Duodenum Mucosa	Duodenum
14	chr7:25353600-25354800	Enhancers	Gastric	stomach
15	chr7:25353600-25355200	Enhancers	Liver	Liver
16	chr7:25353600-25355600	Enhancers	Stomach Mucosa	stomach
17	chr7:25353800-25354400	Enhancers	HUVEC	blood vessel
18	chr7:25353800-25354600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr7:25353800-25355200	Enhancers	Ovary	ovary
20	chr7:25353800-25358400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr7:25354000-25354400	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr7:25354000-25354400	Enhancers	Brain Anterior Caudate	brain
23	chr7:25354000-25355000	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr7:25354000-25355000	Weak transcription	Small Intestine	intestine
25	chr7:25354000-25355600	Enhancers	Fetal Kidney	kidney
26	chr7:25354000-25360000	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr7:25354200-25355000	Active TSS	Rectal Mucosa Donor 29	rectum

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