Variant report

Variant	rs553013162
Chromosome Location	chr15:82338012-82338013
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:82338000..82338797-chr7:158621966..158622832,2	NB4	blood:
2	chr11:64877977..64880621-chr15:82337934..82340842,2	MCF-7	breast:
3	chr15:82088472..82091258-chr15:82337610..82339890,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000117868	Chromatin interaction
ENSG00000259692	Chromatin interaction
ENSG00000254501	Chromatin interaction
ENSG00000149809	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833067	chr15:82234980-82450485	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv2422504	chr15:82293064-82426400	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv827415	chr15:82333348-82340769	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
4	esv3344827	chr15:82334647-82340995	Bivalent Enhancer Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
5	esv3375136	chr15:82336922-82339870	Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
6	esv3440467	chr15:82337922-82340770	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:82335000-82340600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
2	chr15:82335400-82340400	Active TSS	HSMMtube	muscle
3	chr15:82335400-82340600	Active TSS	Brain Inferior Temporal Lobe	brain
4	chr15:82335400-82341200	Active TSS	Fetal Kidney	kidney
5	chr15:82335600-82338200	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr15:82335600-82340600	Active TSS	H9 Cell Line	embryonic stem cell
7	chr15:82335800-82340400	Active TSS	Colon Smooth Muscle	Colon
8	chr15:82336200-82339800	Active TSS	Osteobl	bone
9	chr15:82336200-82340000	Active TSS	ES-I3 Cell Line	embryonic stem cell
10	chr15:82336200-82340200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr15:82336200-82340200	Active TSS	NHLF	lung
12	chr15:82336200-82340400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr15:82336200-82340400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr15:82336200-82340400	Active TSS	HSMM	muscle
15	chr15:82336400-82338200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr15:82336400-82338200	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
17	chr15:82336400-82338400	Flanking Active TSS	Primary B cells from cord blood	blood
18	chr15:82336400-82339800	Active TSS	Primary T cells from cord blood	blood
19	chr15:82336400-82340000	Active TSS	NHDF-Ad	bronchial
20	chr15:82336400-82340400	Active TSS	Pancreatic Islets	Pancreatic Islet
21	chr15:82336400-82340400	Active TSS	Ovary	ovary
22	chr15:82336600-82338200	Bivalent/Poised TSS	Brain Germinal Matrix	brain
23	chr15:82336600-82338200	Bivalent/Poised TSS	Fetal Brain Female	brain
24	chr15:82336600-82338200	Flanking Active TSS	Pancreas	Pancrea
25	chr15:82336600-82339800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr15:82336600-82339800	Active TSS	Small Intestine	intestine
27	chr15:82336600-82340000	Active TSS	iPS-18 Cell Line	embryonic stem cell
28	chr15:82336600-82340000	Active TSS	Muscle Satellite Cultured Cells	--
29	chr15:82336600-82340200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
30	chr15:82336600-82340200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr15:82336600-82340200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr15:82336600-82340200	Active TSS	Aorta	Aorta
33	chr15:82336600-82340200	Active TSS	Rectal Smooth Muscle	rectum
34	chr15:82336600-82340400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr15:82336600-82340400	Active TSS	Psoas Muscle	Psoas
36	chr15:82336600-82340400	Active TSS	A549	lung
37	chr15:82336800-82339800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr15:82336800-82339800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr15:82336800-82340000	Active TSS	HUES64 Cell Line	embryonic stem cell
40	chr15:82336800-82340000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
41	chr15:82336800-82340000	Active TSS	Brain Substantia Nigra	brain
42	chr15:82336800-82340000	Active TSS	Fetal Muscle Trunk	muscle
43	chr15:82336800-82340200	Active TSS	HUES48 Cell Line	embryonic stem cell
44	chr15:82336800-82340200	Active TSS	Brain Angular Gyrus	brain
45	chr15:82336800-82340200	Active TSS	Fetal Lung	lung
46	chr15:82336800-82340200	Active TSS	Right Atrium	heart
47	chr15:82336800-82340200	Active TSS	Thymus	Thymus
48	chr15:82336800-82340400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr15:82336800-82340400	Active TSS	Breast Myoepithelial Primary Cells	Breast
50	chr15:82336800-82340400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin

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