Variant report

Variant	rs553022230
Chromosome Location	chrX:76706163-76706164
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531129	chrX:76703995-77038914	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:76703800-76706200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chrX:76704800-76709000	Weak transcription	Right Atrium	heart
3	chrX:76705000-76710600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chrX:76705000-76713800	Weak transcription	Primary hematopoietic stem cells	blood
5	chrX:76705400-76707200	Enhancers	HUVEC	blood vessel
6	chrX:76705400-76707400	Enhancers	Hela-S3	cervix
7	chrX:76705600-76706600	Weak transcription	NH-A	brain
8	chrX:76705600-76707200	Enhancers	HSMM	muscle
9	chrX:76705600-76708000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chrX:76705600-76710800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chrX:76705800-76706800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chrX:76705800-76706800	Enhancers	Left Ventricle	heart
13	chrX:76706000-76706200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chrX:76706000-76706200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chrX:76706000-76706200	Enhancers	Fetal Muscle Trunk	muscle
16	chrX:76706000-76706800	Enhancers	Fetal Muscle Leg	muscle
17	chrX:76706000-76707200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links