Variant report

Variant	rs553070384
Chromosome Location	chr3:138743115-138743116
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:138743093-138743143	NHDF-neo	bronchial:	n/a
2	chr3:138743093-138743143	NT2-D1	testis:	n/a
3	chr3:138743093-138743143	SKMC	muscle:	n/a
4	chr3:138743093-138743143	HMEC	breast:	n/a
5	chr3:138743093-138743143	Caco-2	colon:	n/a
6	chr3:138743093-138743143	AG04449	skin:	fetal
7	chr3:138743093-138743143	GM19239	blood:	n/a
8	chr3:138743093-138743143	GM12891	blood:	n/a
9	chr3:138743093-138743143	SK-N-SH_RA	brain:	n/a
10	chr3:138743093-138743143	HIPEpiC	eye:	n/a
11	chr3:138743093-138743143	Hela-S3	cervix:	n/a
12	chr3:138743093-138743143	SK-N-SH	brain:	n/a
13	chr3:138743093-138743143	ovcar-3	ovarian:	n/a
14	chr3:138743093-138743143	AG04450	lung:	fetal
15	chr3:138743093-138743143	H1-hESC	embryonic stem cell:	embryo
16	chr3:138743093-138743143	NHBE	bronchial:	n/a
17	chr3:138743093-138743143	U87	brain:	n/a
18	chr3:138743093-138743143	SAEC	small airway:	n/a
19	chr3:138743093-138743143	IMR90	lung:	fetal
20	chr3:138743093-138743143	PANC-1	pancreas:	n/a
21	chr3:138743093-138743143	GM12892	blood:	n/a
22	chr3:138743093-138743143	HCM	heart:	n/a
23	chr3:138743093-138743143	HAEpiC	amniotic membrane:	n/a
24	chr3:138743093-138743143	AG09319	gingival:	n/a
25	chr3:138743093-138743143	HepG2	liver:	n/a
26	chr3:138743093-138743143	AG09309	skin:	n/a
27	chr3:138743093-138743143	LNCaP	prostate:	n/a
28	chr3:138743093-138743143	HPAEpiC	pulmonary alveolar:	n/a
29	chr3:138743093-138743143	CMK	blood:	n/a
30	chr3:138743093-138743143	HRCEpiC	kidney:	n/a
31	chr3:138743093-138743143	MCF10A-Er-Src	breast:	n/a
32	chr3:138743093-138743143	PrEC	prostate:	n/a
33	chr3:138743093-138743143	AoSMC	blood vessel:	n/a
34	chr3:138743093-138743143	BE2_C	brain:	n/a
35	chr3:138743093-138743143	Jurkat	blood:	n/a
36	chr3:138743093-138743143	A549	lung:	n/a
37	chr3:138743093-138743143	HEK293	kidney:	embryo
38	chr3:138743093-138743143	HCF	heart:	n/a
39	chr3:138743093-138743143	NB4	blood:	n/a
40	chr3:138743093-138743143	PFSK-1	brain:	n/a
41	chr3:138743093-138743143	HEEpiC	esophagus:	n/a
42	chr3:138743093-138743143	T-47D	breast:	n/a
43	chr3:138743093-138743143	HRPEpiC	eye:	n/a
44	chr3:138743093-138743143	HL-60	blood:	n/a
45	chr3:138743093-138743143	HRE	kidney:	n/a
46	chr3:138743093-138743143	MCF-7	breast:	n/a
47	chr3:138743093-138743143	ProgFib	skin:	n/a
48	chr3:138743093-138743143	HCT-116	colon:	n/a
49	chr3:138743093-138743143	HNPCEpiC	eye:	n/a
50	chr3:138743093-138743143	HUVEC	blood vessel:	n/a

No data

Variant related genes	Relation type
PRR23B	CpG island

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002612	chr3:138213274-138831792	Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv536726	chr3:138213274-138831792	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv869205	chr3:138248190-138775288	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv868955	chr3:138248190-138848947	Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
5	nsv591854	chr3:138348081-138764229	Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	nsv877542	chr3:138645013-138750904	Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv829736	chr3:138737352-138934758	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	esv3349122	chr3:138739730-138763779	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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