Variant report

Variant	rs553106054
Chromosome Location	chr15:30021605-30021606
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:30020490-30021721	K562	blood:	n/a	n/a
2	CEBPB	chr15:30021314-30021647	H1-hESC	embryonic stem cell:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM189A1-3	chr15:30020390-30021735	ENSG00000259644.1

Variant related genes	Relation type
HMGN2P5	TF binding region

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456736	chr15:29327352-30208654	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv568675	chr15:29327352-30208654	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv995038	chr15:29744279-30366124	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv1038495	chr15:29825859-30351687	Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv542293	chr15:29825859-30351687	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv832944	chr15:29861062-30082057	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
7	nsv832945	chr15:29932599-30123721	Genic enhancers Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
8	esv2422463	chr15:30003189-30215336	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
9	nsv984039	chr15:30020901-30024443	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:29989600-30027200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr15:29990200-30028400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr15:29990400-30026400	Strong transcription	Stomach Smooth Muscle	stomach
4	chr15:29991200-30022400	Strong transcription	Skeletal Muscle Female	skeletal muscle
5	chr15:29992000-30026600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr15:30005000-30023000	Strong transcription	Muscle Satellite Cultured Cells	--
7	chr15:30005400-30022800	Strong transcription	HSMMtube	muscle
8	chr15:30014800-30028400	Strong transcription	NHEK	skin
9	chr15:30015000-30022200	Strong transcription	Osteobl	bone
10	chr15:30015000-30024400	Weak transcription	Psoas Muscle	Psoas
11	chr15:30015000-30028400	Weak transcription	Stomach Mucosa	stomach
12	chr15:30015000-30035000	Strong transcription	Adipose Nuclei	Adipose
13	chr15:30015200-30022800	Strong transcription	NH-A	brain
14	chr15:30015200-30023200	Strong transcription	Placenta	Placenta
15	chr15:30015200-30024200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr15:30015400-30026600	Strong transcription	Brain Inferior Temporal Lobe	brain
17	chr15:30015400-30028600	Strong transcription	HUVEC	blood vessel
18	chr15:30015600-30026600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr15:30015600-30034800	Strong transcription	Fetal Muscle Leg	muscle
20	chr15:30015600-30035200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr15:30015600-30037600	Weak transcription	Small Intestine	intestine
22	chr15:30015800-30023000	Strong transcription	Fetal Stomach	stomach
23	chr15:30015800-30023200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr15:30015800-30026400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr15:30015800-30026800	Strong transcription	Fetal Muscle Trunk	muscle
26	chr15:30015800-30027200	Weak transcription	Rectal Smooth Muscle	rectum
27	chr15:30015800-30027600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr15:30015800-30034400	Strong transcription	Cortex derived primary cultured neurospheres	brain
29	chr15:30016600-30021800	Strong transcription	HUES6 Cell Line	embryonic stem cell
30	chr15:30016600-30023000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr15:30016600-30025800	Strong transcription	Left Ventricle	heart
32	chr15:30016600-30029800	Strong transcription	H1 Cell Line	embryonic stem cell
33	chr15:30016600-30035200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
34	chr15:30016600-30052000	Weak transcription	Spleen	Spleen
35	chr15:30016600-30068200	Weak transcription	Brain Germinal Matrix	brain
36	chr15:30016800-30023000	Strong transcription	ES-I3 Cell Line	embryonic stem cell
37	chr15:30016800-30027200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr15:30016800-30035600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
39	chr15:30017000-30023200	Strong transcription	Fetal Intestine Large	intestine
40	chr15:30017000-30024800	Strong transcription	Right Ventricle	heart
41	chr15:30017400-30035600	Strong transcription	HUES48 Cell Line	embryonic stem cell
42	chr15:30017600-30024200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr15:30017600-30035400	Strong transcription	HUES64 Cell Line	embryonic stem cell
44	chr15:30017600-30041600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr15:30017600-30048600	Weak transcription	Fetal Brain Male	brain
46	chr15:30018200-30029400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr15:30018200-30030800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr15:30018200-30052000	Weak transcription	Gastric	stomach
49	chr15:30018400-30024800	Weak transcription	Fetal Brain Female	brain
50	chr15:30018400-30035800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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