Variant report

Variant	rs553108550
Chromosome Location	chr4:148412099-148412100
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TMEM184C-2	chr4:148407981-148413807	NONHSAT098682

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830109	chr4:148295061-148468605	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv1028958	chr4:148377752-148793485	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv880241	chr4:148411178-148461073	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148403800-148417600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:148404200-148413000	Weak transcription	Osteobl	bone
3	chr4:148404200-148413200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr4:148404200-148418800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr4:148404200-148419000	Weak transcription	HMEC	breast
6	chr4:148404600-148413000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:148404600-148413000	Weak transcription	Stomach Smooth Muscle	stomach
8	chr4:148404600-148413200	Weak transcription	Fetal Muscle Leg	muscle
9	chr4:148404600-148419000	Weak transcription	NHLF	lung
10	chr4:148405800-148416000	Weak transcription	Spleen	Spleen
11	chr4:148407000-148413200	Weak transcription	Right Atrium	heart
12	chr4:148408200-148413200	Weak transcription	Fetal Stomach	stomach
13	chr4:148408400-148413200	Weak transcription	Aorta	Aorta
14	chr4:148408400-148416800	Weak transcription	Right Ventricle	heart
15	chr4:148410000-148413200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr4:148410000-148414000	Weak transcription	NHEK	skin
17	chr4:148410200-148413000	Weak transcription	NH-A	brain
18	chr4:148410200-148413400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr4:148410200-148413400	Weak transcription	Fetal Intestine Small	intestine
20	chr4:148410200-148413600	Weak transcription	NHDF-Ad	bronchial
21	chr4:148410600-148413000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr4:148410600-148413200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr4:148411200-148415400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr4:148411200-148415600	Weak transcription	Left Ventricle	heart
25	chr4:148411400-148413400	Enhancers	Fetal Heart	heart
26	chr4:148411400-148414000	Weak transcription	Adipose Nuclei	Adipose
27	chr4:148411800-148412400	Flanking Active TSS	Fetal Lung	lung
28	chr4:148412000-148412200	Enhancers	Fetal Kidney	kidney
29	chr4:148412000-148414000	Enhancers	Ovary	ovary

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