Variant report

Variant	rs553157945
Chromosome Location	chr12:119576942-119576943
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047036	chr12:119477583-119992640	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv902	chr12:119576112-119621140	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:119571200-119594600	Weak transcription	Fetal Brain Male	brain
2	chr12:119571600-119582200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr12:119571800-119583000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr12:119572000-119583200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr12:119573000-119582600	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr12:119573000-119585000	Weak transcription	Brain Angular Gyrus	brain
7	chr12:119573000-119586000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr12:119574400-119581200	Strong transcription	Brain Germinal Matrix	brain
9	chr12:119575400-119577200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr12:119575800-119580000	Strong transcription	Fetal Brain Female	brain
11	chr12:119576000-119577400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr12:119576200-119577600	Strong transcription	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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